NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG202
Library SH
(Link to library)
Clone ID SHG202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11089-1
Original site URL
Representative seq. ID SHG202P
(Link to Original site)
Representative DNA sequence 
>SHG202 (SHG202Q) /CSM/SH/SHG2-A/SHG202Q.Seq.d/
AATGATAAAAAATTCAAAGCACAACCACCACCAAAGAATAATTATAGAGGTGGTGGTGAC
GATGAAGAGGATGATGAATTTGAAGAGGACGATGACGAAGATGAAGGAGATGAATTTGGA
GAGGAAGAAGATGAAGATGATATCGATGTTGAAAATATAATAGCAAGTGATTCAATGGAT
ATTGATATTCAAGATGATGGATCACAACAATTATTTTTATGGTCAAGAAAACCTGTTCAA
GATTTAGTACCCCACAAGAAACCATTAATCTTTCAACAATTAGAAGTAGATTATACAGAG
ATTAAAGAACCAGTACCAGGTATGCCAGGTCCAAAAGTTGGACCATTACCAGCAATTCGT
TTATTTGGTGTCACAAAAGAAGGTAATAGTGTTTTATGTAAAGTTCATGGTTTCTTACCT
TACTTTTTCATTAGTTGTCCTCCAGGTTTCACTGAAGCAGATTGTAAATCTTTAAAACAT
GATTTAAATGAATCAATGAAAATGTCATCAAATCAAAGCAATGAAAAAGATATTGAAAAT
ATTGTTGTTTCAATTGATATAGAGAAAAAGXXXXXXXXXXAAAAGGATTTAAAATCTGCC
GAAGAATATACAAAGAGTGTCATTAGTGATCTCTTACAGAATCGTTTAGATCTTTCAATG
TTGGTAATTACAAAAGCTCTCTCAAAAACTCAATACAAAGGAAAGGTAATCCATAATGAA
TTGGCTAGAAAAATGAGAGCTAGAGATCCGGCAACAGCTCCAAATTTAGGTGATCGTGTG
CCTTATGTGGTCATTCAAGGCTCAAAGGGTGCACCAATCTATGAGAAAGCTGAAGATCCA
CTTTATGCTTTGGAACATAATATCCTTTTGGATTGTCAATACTATTTGGATAAACAATTG
AAAGCACCATTGATTCGTATTTTCAAACCAATTATGTCAAATCCTGATTTAATTTTCCAT
GGTGAACATACTAGAACCATTGCTCAATCAACACTCAGTGATAATAACAAAGGTTTCTTT
GGTACTTTGAAAAAGAAAAAAGTCTGTATGAATTGTCCAAAGGAATTAACTGATACAGAA
TCTACAACTTGTATAAATTGTCAACATAAAGAAGCCTCTCTCTATCAAACCTCTTTGGAA
AAAGTTACAAGTTTAGAAACTAAATTCTCTGAAGCTTGGACTCAATGTCAACGTTGTTCT
GGTAGTTTACATCAACCTGTACTTTGTTCAAATCGTGATTGTCCAATCTTTTATATGAGA
ACTAAAGTTCAATTAGATCTTATNAAGCAAAGAAAACTTTAAATAGATTTAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
NDKKFKAQPPPKNNYRGGGDDEEDDEFEEDDDEDEGDEFGEEEDEDDIDVENIIASDSMD
IDIQDDGSQQLFLWSRKPVQDLVPHKKPLIFQQLEVDYTEIKEPVPGMPGPKVGPLPAIR
LFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQSNEKDIEN
IVVSIDIEKK---

---KDLKSAEEYTKSVISDLLQNRLDLSMLVITKALSKTQYKGKVIHNELARKMRARDPA
TAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIFKPI
MSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQHKE
ASLYQTSLEKVTSLETKFSEAWTQCQRCSGSLHQPVLCSNRDCPIFYMRTKVQLDLXKQR
KL*idl
Translated Amino Acid sequence (All Frames) 
Frame A:
NDKKFKAQPPPKNNYRGGGDDEEDDEFEEDDDEDEGDEFGEEEDEDDIDVENIIASDSMD
IDIQDDGSQQLFLWSRKPVQDLVPHKKPLIFQQLEVDYTEIKEPVPGMPGPKVGPLPAIR
LFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQSNEKDIEN
IVVSIDIEKK---

---kri*nlpkniqrvslvisyriv*ifqcw*lqklsqklntker*simnwlek*eleir
qqlqi*vivclmwsfkaqrvhqsmrklkihfmlwniisfwivntiwinn*khh*fvfsnq
lcqili*fsmvnilepllnqhsviitkvslvl*krkksv*ivqrn*liqnlqlv*ivnik
kplsikplwkklqv*klnslklglnvnvvlvvyinlyfvqivivqsfi*elkfn*ilxsk
enfk*i*

Frame B:
miknskhnhhqriiievvvtmkrmmnlkrtmtkmkemnlerkkmkmismlki**qviqwi
lifkmmdhnnyfygqenlfki*yptrnh*sfnn*k*iiqrlknqyqvcqvqkldhyqqfv
ylvsqkkvivfyvkfmvsyltfslvvlqvslkqivnl*nmi*mnq*kchqikamkkilki
llfqli*rk---

---kgfkicrriykech**sltesfrsfnvgnyksslknsiqrkgnp**ig*knes*rsg
nsskfr*scalcghsrlkgctnl*es*rstlcfgt*ypfglsilfg*tiestidsyfqtn
yvks*fnfpw*ty*nhcsintq***qrflwyfekekslyelskgin*yriynlyklst*r
slslsnlfgksykfrn*il*sldsmstlfw*ftstctlfks*lsnllyen*ssirsyxak
ktlnrfn

Frame C:
**kiqsttttke*l*rww*r*rg**i*rgr*rr*rr*iwrgrr*r*yrc*kynsk*fngy
*ysr*wittiifmvkktcsrfstpqetinlstirsrlyrd*rtstryarskswtitsnsf
iwchkrr**cfm*sswfltllfh*lssrfh*srl*ifkt*fk*inenvikskq*kry*ky
ccfn*yrek---

---KDLKSAEEYTKSVISDLLQNRLDLSMLVITKALSKTQYKGKVIHNELARKMRARDPA
TAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIFKPI
MSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQHKE
ASLYQTSLEKVTSLETKFSEAWTQCQRCSGSLHQPVLCSNRDCPIFYMRTKVQLDLXKQR
KL*idl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG202 (SHG202Q) /CSM/SH/SHG2-A/SHG202Q.Seq.d/                       2466   0.0
SHD876 (SHD876Q) /CSM/SH/SHD8-D/SHD876Q.Seq.d/                       1376   0.0
AHM888 (AHM888Q) /CSM/AH/AHM8-D/AHM888Q.Seq.d/                       1376   0.0
AHM863 (AHM863Q) /CSM/AH/AHM8-C/AHM863Q.Seq.d/                       1376   0.0
AHL214 (AHL214Q) /CSM/AH/AHL2-A/AHL214Q.Seq.d/                       1376   0.0
AHF264 (AHF264Q) /CSM/AH/AHF2-C/AHF264Q.Seq.d/                       1376   0.0
AHD638 (AHD638Q) /CSM/AH/AHD6-B/AHD638Q.Seq.d/                       1376   0.0
AHC209 (AHC209Q) /CSM/AH/AHC2-A/AHC209Q.Seq.d/                       1368   0.0
AHI547 (AHI547Q) /CSM/AH/AHI5-B/AHI547Q.Seq.d/                       1294   0.0
AHL892 (AHL892Q) /CSM/AH/AHL8-D/AHL892Q.Seq.d/                       1292   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CO250905|CO250905.1 WS00812.B21_E11 WS-X-N-A-9 Picea glauca cDNA clone WS00812_E11 3',mRNA sequence.    48   6e-06  3
DR551548|DR551548.1 WS03220.C21_K12 WS-MC-N-A-20 Picea glauca cDNA clone WS03220_K12 3, mRNA sequence.    48   7e-06  3
DR563019|DR563019.1 WS02626.C21_J11 WS-PP-N-A-12 Picea glauca cDNA clone WS02626_J11 3, mRNA sequence.    48   1e-05  3
DR516073|DR516073.1 WS02742.CR_G09 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02742_G09 3, mRNA sequence.    48   1e-05  3
DR488694|DR488694.1 WS0291.BR_L16 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0291_L16 3, mRNA sequence.    48   1e-05  3
DR490439|DR490439.1 WS02914.CR_L18 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02914_L18 3, mRNA sequence.    48   1e-05  3
DR521343|DR521343.1 WS0279.BR_L05 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0279_L05 3, mRNA sequence.    48   1e-05  3
DR490963|DR490963.1 WS02916.CR_D04 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02916_D04 3, mRNA sequence.    48   1e-05  3
DR491658|DR491658.1 WS02918.CR_B22 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02918_B22 3, mRNA sequence.    48   1e-05  3
DR481036|DR481036.1 WS0285.BR_A16 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0285_A16 3, mRNA sequence.    48   1e-05  3
dna update 2006. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54N97) RecName: Full=DNA polymerase delta catalytic subunit;  ...   483   e-135
AB240141_1(AB240141|pid:none) Chlorella pyrenoidosa polD mRNA fo...   255   3e-66
(Q9LRE6) RecName: Full=DNA polymerase delta catalytic subunit;  ...   248   4e-64
BC081093_1(BC081093|pid:none) Xenopus laevis polymerase (DNA dir...   247   7e-64
CR942428_1(CR942428|pid:none) Xenopus tropicalis finished cDNA, ...   246   9e-64
AY883095_1(AY883095|pid:none) Danio rerio DNA polymerase delta1 ...   245   2e-63
DQ160246_1(DQ160246|pid:none) Arabidopsis thaliana DNA-directed ...   240   7e-62
AE017351_51(AE017351|pid:none) Cryptococcus neoformans var. neof...   240   9e-62
AP007162_156(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   239   1e-61
L07734_1(L07734|pid:none) Schizosaccharomyces pombe DNA polymera...   239   1e-61
protein update 2009. 4.18
PSORT 

 psg: 0.53  gvh: 0.05  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.04
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHG202 is nuc
5' end seq. ID SHG202F
5' end seq. 
>SHG202F.Seq
AATGATAAAAAATTCAAAGCACAACCACCACCAAAGAATAATTATAGAGGTGGTGGTGAC
GATGAAGAGGATGATGAATTTGAAGAGGACGATGACGAAGATGAAGGAGATGAATTTGGA
GAGGAAGAAGATGAAGATGATATCGATGTTGAAAATATAATAGCAAGTGATTCAATGGAT
ATTGATATTCAAGATGATGGATCACAACAATTATTTTTATGGTCAAGAAAACCTGTTCAA
GATTTAGTACCCCACAAGAAACCATTAATCTTTCAACAATTAGAAGTAGATTATACAGAG
ATTAAAGAACCAGTACCAGGTATGCCAGGTCCAAAAGTTGGACCATTACCAGCAATTCGT
TTATTTGGTGTCACAAAAGAAGGTAATAGTGTTTTATGTAAAGTTCATGGTTTCTTACCT
TACTTTTTCATTAGTTGTCCTCCAGGTTTCACTGAAGCAGATTGTAAATCTTTAAAACAT
GATTTAAATGAATCAATGAAAATGTCATCAAATCAAAGCAATGAAAAAGATATTGAAAAT
ATTGTTGTTTCAATTGATATAGAGAAAAAGNNNNNNNNNN
Length of 5' end seq. 580
3' end seq. ID SHG202Z
3' end seq. 
>SHG202Z.Seq
NNNNNNNNNNAAAAGGATTTAAAATCTGCCGAAGAATATACAAAGAGTGTCATTAGTGAT
CTCTTACAGAATCGTTTAGATCTTTCAATGTTGGTAATTACAAAAGCTCTCTCAAAAACT
CAATACAAAGGAAAGGTAATCCATAATGAATTGGCTAGAAAAATGAGAGCTAGAGATCCG
GCAACAGCTCCAAATTTAGGTGATCGTGTGCCTTATGTGGTCATTCAAGGCTCAAAGGGT
GCACCAATCTATGAGAAAGCTGAAGATCCACTTTATGCTTTGGAACATAATATCCTTTTG
GATTGTCAATACTATTTGGATAAACAATTGAAAGCACCATTGATTCGTATTTTCAAACCA
ATTATGTCAAATCCTGATTTAATTTTCCATGGTGAACATACTAGAACCATTGCTCAATCA
ACACTCAGTGATAATAACAAAGGTTTCTTTGGTACTTTGAAAAAGAAAAAAGTCTGTATG
AATTGTCCAAAGGAATTAACTGATACAGAATCTACAACTTGTATAAATTGTCAACATAAA
GAAGCCTCTCTCTATCAAACCTCTTTGGAAAAAGTTACAAGTTTAGAAACTAAATTCTCT
GAAGCTTGGACTCAATGTCAACGTTGTTCTGGTAGTTTACATCAACCTGTACTTTGTTCA
AATCGTGATTGTCCAATCTTTTATATGAGAACTAAAGTTCAATTAGATCTTATNAAGCAA
AGAAAACTTTAAATAGATTTAAT
Length of 3' end seq. 743
Connected seq. ID SHG202P
Connected seq. 
>SHG202P.Seq
AATGATAAAAAATTCAAAGCACAACCACCACCAAAGAATAATTATAGAGGTGGTGGTGAC
GATGAAGAGGATGATGAATTTGAAGAGGACGATGACGAAGATGAAGGAGATGAATTTGGA
GAGGAAGAAGATGAAGATGATATCGATGTTGAAAATATAATAGCAAGTGATTCAATGGAT
ATTGATATTCAAGATGATGGATCACAACAATTATTTTTATGGTCAAGAAAACCTGTTCAA
GATTTAGTACCCCACAAGAAACCATTAATCTTTCAACAATTAGAAGTAGATTATACAGAG
ATTAAAGAACCAGTACCAGGTATGCCAGGTCCAAAAGTTGGACCATTACCAGCAATTCGT
TTATTTGGTGTCACAAAAGAAGGTAATAGTGTTTTATGTAAAGTTCATGGTTTCTTACCT
TACTTTTTCATTAGTTGTCCTCCAGGTTTCACTGAAGCAGATTGTAAATCTTTAAAACAT
GATTTAAATGAATCAATGAAAATGTCATCAAATCAAAGCAATGAAAAAGATATTGAAAAT
ATTGTTGTTTCAATTGATATAGAGAAAAAG----------AAAAGGATTTAAAATCTGCC
GAAGAATATACAAAGAGTGTCATTAGTGATCTCTTACAGAATCGTTTAGATCTTTCAATG
TTGGTAATTACAAAAGCTCTCTCAAAAACTCAATACAAAGGAAAGGTAATCCATAATGAA
TTGGCTAGAAAAATGAGAGCTAGAGATCCGGCAACAGCTCCAAATTTAGGTGATCGTGTG
CCTTATGTGGTCATTCAAGGCTCAAAGGGTGCACCAATCTATGAGAAAGCTGAAGATCCA
CTTTATGCTTTGGAACATAATATCCTTTTGGATTGTCAATACTATTTGGATAAACAATTG
AAAGCACCATTGATTCGTATTTTCAAACCAATTATGTCAAATCCTGATTTAATTTTCCAT
GGTGAACATACTAGAACCATTGCTCAATCAACACTCAGTGATAATAACAAAGGTTTCTTT
GGTACTTTGAAAAAGAAAAAAGTCTGTATGAATTGTCCAAAGGAATTAACTGATACAGAA
TCTACAACTTGTATAAATTGTCAACATAAAGAAGCCTCTCTCTATCAAACCTCTTTGGAA
AAAGTTACAAGTTTAGAAACTAAATTCTCTGAAGCTTGGACTCAATGTCAACGTTGTTCT
GGTAGTTTACATCAACCTGTACTTTGTTCAAATCGTGATTGTCCAATCTTTTATATGAGA
ACTAAAGTTCAATTAGATCTTATNAAGCAAAGAAAACTTTAAATAGATTTAAT
Length of connected seq. 1303
Full length Seq ID -
Full length Seq. -
Length of full length seq. -