SHG152
Library SH
(Link to library)
Clone ID SHG152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHG152P
(Link to Original site)
Representative DNA sequence
>SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXX
XXXXXXTAGGTTCATTANCCCTCACTCAACCAATGGTCATTGCAGGTAATGCCTTCACTC
AAACAAGTGCTACTGCCGTCTTAAATATGGTCGCTGGTGGTTCAATTGAATCAAAAGTTA
TTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTGTAACT
TTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTG
CAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAA
TCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCT
CATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATG
TTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTA
CTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTC
TCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCTC
AAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACT
GTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAA
TTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAA
CTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATT
sequence update 2002.10.25
Translated Amino Acid sequence
iqstnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---GSLXLTQPMVIAGNAFTQTSATAVLNMVAGGSIESKVIDFTHGTIQGVGALKCGTCN
FANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSS
SSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSC
LTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*idstpplq*q*
ikiiqliliflysnqcicqlty*lfkhtlfnfktiki


Translated Amino Acid sequence (All Frames)
Frame A:
iqstnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---*vhxpslnqwslqvmpslkqvllps*iwslvvqlnqkllislmvpfkvlvllnvvlv
tlpirslltstllvtlkwpqlqlsmqtlml*cqsppqpkpqslnhqprlstvrpplnhhq
ahhhpslnnsfq*sfvqvllmllvtsmslpqkpiklklplvlysnssqpqllkvmspqla
vspqalllllnklpvllllllkkllwllplkfgql*ihhvtvnvd*rdykliqlllsndn
klk*ynsflfffiltnvfvn*linflntpfsilkq*k

Frame B:
fnqqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytittnpisl
lptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---rfixphstnghcr*clhsnkcycrlkygrwwfn*iksy*fhswyhsrcwcs*mwyl*
lcq*drc*pqhcw*r*ngrncnclckh*cfnvnhhlnpnlnlsiinqdcqr*dhhsiiik
liiihl*tirsndrlfryc*ccw*pqcrclrsqss*nclwyciqihlspsc*r*clls*l
shlkhccccstscrccccccskscygccl*slvnckftm*l*mwieeiin*fnssspmti
n*nntthsyfslf*pmylsinlltf*thpfqf*nnkn

Frame C:
sinkqktti*knnnl**sknn*ritncffllltinsniff*infqlfcfftqsqptlyhy
yqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---GSLXLTQPMVIAGNAFTQTSATAVLNMVAGGSIESKVIDFTHGTIQGVGALKCGTCN
FANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSS
SSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSC
LTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*idstpplq*q*
ikiiqliliflysnqcicqlty*lfkhtlfnfktiki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 1076 0.0
SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/ 1076 0.0
SHD645 (SHD645Q) /CSM/SH/SHD6-B/SHD645Q.Seq.d/ 1076 0.0
SHB237 (SHB237Q) /CSM/SH/SHB2-B/SHB237Q.Seq.d/ 1076 0.0
SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/ 1070 0.0
SHA633 (SHA633Q) /CSM/SH/SHA6-B/SHA633Q.Seq.d/ 1070 0.0
SHC723 (SHC723Q) /CSM/SH/SHC7-A/SHC723Q.Seq.d/ 1068 0.0
SHB618 (SHB618Q) /CSM/SH/SHB6-A/SHB618Q.Seq.d/ 1068 0.0
SHG233 (SHG233Q) /CSM/SH/SHG2-B/SHG233Q.Seq.d/ 1057 0.0
SFG603 (SFG603Q) /CSM/SF/SFG6-A/SFG603Q.Seq.d/ 1057 0.0

own update 2003.10. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 1076 0.0 1
AX344185|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.11 4
AX251781|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.11 4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.11 4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.11 4
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.11 1
AL845362|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20. 38 0.39 3
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 48 0.44 1
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE. 48 0.44 1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 48 0.44 1
dna update 2006. 3.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 322 1e-86

protein update 2008.11.17
PSORT

psg: 0.88 gvh: 0.51 alm: 0.41 top: 0.60 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for SHG152 is cyt

5' end seq. ID SHG152F
5' end seq.
>SHG152F.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID SHG152Z
3' end seq.
>SHG152Z.Seq
NNNNNNNNNNTAGGTTCATTANCCCTCACTCAACCAATGGTCATTGCAGGTAATGCCTTC
ACTCAAACAAGTGCTACTGCCGTCTTAAATATGGTCGCTGGTGGTTCAATTGAATCAAAA
GTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTGT
AACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGCA
ACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACC
TCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCA
AGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCT
GATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCT
GGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGC
TGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCT
GCTCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGT
AACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAA
TAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAA
TTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATT
Length of 3' end seq. 834
Connected seq. ID SHG152P
Connected seq.
>SHG152P.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA----
------TAGGTTCATTANCCCTCACTCAACCAATGGTCATTGCAGGTAATGCCTTCACTC
AAACAAGTGCTACTGCCGTCTTAAATATGGTCGCTGGTGGTTCAATTGAATCAAAAGTTA
TTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGTACTTGTAACT
TTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTG
CAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAA
TCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCT
CATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATG
TTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTA
CTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTC
TCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCTC
AAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACT
GTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAA
TTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAA
CTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATT
Length of connected seq. 1120
Full length Seq ID -
Full length Seq. -
Length of full length seq. -