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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG145
Library SH
(Link to library)
Clone ID SHG145
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID SHG145P
(Link to Original site)
Representative DNA sequence 
>SHG145 (SHG145Q) /CSM/SH/SHG1-B/SHG145Q.Seq.d/
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAA
ACCTTTTGTXXXXXXXXXXTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTA
GAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACAT
TGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAG
GTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAG
TTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCNCCAAATGAAA
TACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTAT
CATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACT
CAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACG
TTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTT
NTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAA
TACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTA
AAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAA
ATAAATAAATGTTAAATTAAAATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
si**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*il
qhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiq
mnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*slla
hi*DYLGGPNFLINSIDVNKPF---

---AQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILA
IIRGYSFTDIXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHS
GSSVKNTSGVLYXLFNSTSFQYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIG
SVGGALAIGALAYYFKIPFRVKKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m
ln*n
Translated Amino Acid sequence (All Frames) 
Frame A:
iylikikfs*nn*islf*fsfikiikkpnsk*kkslikmekkiillilflffisgysmnp
ptpidaiyddksftlifnsnlpystrlilyknekeprtemapnyfncslvdgerhclfhs
depfsrlwgsidskvcvrdksntvedctfdasglvyypkvynlkyskkpktsgedivitg
sylrlfgws*fpy*fh*ck*tfc---

---csr*kdins*r*k*reftlcynihwssfrtkynidlyktndfrnsnh*k*n*kryfs
nnswl*fyryxqcklnsfirncssfm*frm*fixk*nt****fk*n*yyk**y*lfimpf
rfkcekyirsiixpi*lniisi*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw
*cwwcscyrcsclll*ntfscekiyr*kilkkkm*i*nhkshmckikt*lkik*ink*in
vklkf

Frame B:
si**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*il
qhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiq
mnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*slla
hi*DYLGGPNFLINSIDVNKPF---

---AQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILA
IIRGYSFTDIXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHS
GSSVKNTSGVLYXLFNSTSFQYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIG
SVGGALAIGALAYYFKIPFRVKKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m
ln*n

Frame C:
lfnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifness
ntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr
*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywl
ifkiiwvvlislliplm*inll---

---lkmkry**lemkvervhsllqhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q
*fvvivlqixsmqa*qfhqklflfhvi*nvvyxqmkylmiviqvklilqivilivyhaip
vqv*kihqeyyxsyltqhhfnimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlv
vlvvlllsvllpitlkylfv*knl*vknfkkknvnlksqityv*n*nltknkink*inkc
*iki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG145 (SHG145Q) /CSM/SH/SHG1-B/SHG145Q.Seq.d/                       1298   0.0
SHA494 (SHA494Q) /CSM/SH/SHA4-D/SHA494Q.Seq.d/                       1298   0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                       1144   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1144   0.0
CHM762 (CHM762Q) /CSM/CH/CHM7-C/CHM762Q.Seq.d/                       1144   0.0
CHL785 (CHL785Q) /CSM/CH/CHL7-D/CHL785Q.Seq.d/                       1144   0.0
AHO494 (AHO494Q) /CSM/AH/AHO4-D/AHO494Q.Seq.d/                       1144   0.0
AHN746 (AHN746Q) /CSM/AH/AHN7-B/AHN746Q.Seq.d/                       1144   0.0
AHM260 (AHM260Q) /CSM/AH/AHM2-C/AHM260Q.Seq.d/                       1144   0.0
AHL496 (AHL496Q) /CSM/AH/AHL4-D/AHL496Q.Seq.d/                       1144   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1144   0.0    1
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1144   0.0    1
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    82   6e-31  6
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.13   1
AL935175|AL935175.6 Mouse DNA sequence from clone RP23-397E13 on chromosome 2.    38   0.18   5
CT025578|CT025578.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.29   2
CT573049|CT573049.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-18H22.    36   0.29   2
BX255889|BX255889.7 Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17.    36   0.29   2
AC146777|AC146777.27 Medicago truncatula clone mth2-173c10, complete sequence.    36   0.31   7
AC181433|AC181433.1 Strongylocentrotus purpuratus clone R3-50H18, WORKING DRAFT SEQUENCE, 12 unordered pieces.    40   0.57   3
dna update 2006. 3.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   345   3e-93
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   335   2e-90
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   335   2e-90
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   335   2e-90
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   335   2e-90
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   335   2e-90
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   334   4e-90
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   322   2e-86
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   322   2e-86
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   322   2e-86
protein update 2009. 4.18
PSORT 

 psg: 0.75  gvh: 0.65  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHG145 is cyt
5' end seq. ID SHG145F
5' end seq. 
>SHG145F.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAA
ACCTTTTGTNNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID SHG145Z
3' end seq. 
>SHG145Z.Seq
NNNNNNNNNNTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTAGAGAGAGTT
CACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATA
TAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAG
CAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAG
AAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCNCCAAATGAAATACTTGATG
ATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATT
CCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCAT
TTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAA
NAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTG
GTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTC
GTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAA
ATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAA
TGTTAAATTAAAATTT
Length of 3' end seq. 736
Connected seq. ID SHG145P
Connected seq. 
>SHG145P.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAA
ACCTTTTGT----------TGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTA
GAGAGAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACAT
TGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAG
GTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAG
TTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCNCCAAATGAAA
TACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTAT
CATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACT
CAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACG
TTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTT
NTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAA
TACCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTA
AAATCACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAA
ATAAATAAATGTTAAATTAAAATTT
Length of connected seq. 1335
Full length Seq ID -
Full length Seq. -
Length of full length seq. -