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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG142
Library SH
(Link to library)
Clone ID SHG142
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14518-1
Original site URL
Representative seq. ID SHG142E
(Link to Original site)
Representative DNA sequence 
>SHG142 (SHG142Q) /CSM/SH/SHG1-B/SHG142Q.Seq.d/
TCATATTTGGAATATTTACATATTACTAAATTTAAAATGGATGAAGATTATGAACAAACA
CTTTTAGTCAAAAAGGAATGTTTTATTTATAGAATTCCACCAAGACCAAGTGCAAGTGGT
TATAAAGCTCAAGATTGGGATCCATCTTCCTTTATTTGGACTGGCAGATTAGTTATTGTA
GCAAGAGGTGAAAATTGTGTTATCAGATTTGAAGATCCAAATAATGGTGAAATCTTTGCA
CAATGCCCATTTGATCAAAACTCTGTTGAACCAGTTGTCGATAGTAGTCGTTATTTTGTA
ATTAGAATTAAAGATGGTGAACGTCATGCATTTGTTGGAATGGGTTTCACCGATAGAGAT
GATGCTTTTGAATTCAATGCAACTTTACAAGATCATCAAAATTATATTAAAAATAAAAAA
GATATTGAAATTCAAAGAAGAAATTATGAAAATGAACCAAAGAAAGATTATAGTTTAAAG
ACTGGTCAAACAATTCATATTCCATTTAAAGCACCAACTTCAAAAGCACCAGCTGGAAAT
AATAATAACAATAATAATAAAAAGAATTTACCAGTTTTAACAGGTGCAAGTGGTGGTGGT
TTCCTTTTATCTCCACCTCCACCAGCTTCTTCAAAAACTATTCAAAAACCACCTCAACAA
AATGATTTCTTCTCTTCTCCACAACAAAATAATAATAATAACAATAATAATATTTTTGGA
AATGACCCATTTAATTTCAACTCTTCACCACAACAACCACAACAACCACCACAACAACAA
CAACAACAAAATAATAATAATAGTAATAATAGAAATAATAATAACAGCTTTGATGGTTTT
GGTGACTTTAGCGATTTTGGAAATAAGAGCAACAATAGCAACAATAATAGTTTTGGAAAT
AATAATAATAATGATAATAACAATTTTGGAAATAATAATAATAACAACCTCTTTTCACCA
CCACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAATCAATTCGGTTTA
ACTAAGTTTATTCATT
sequence update 2002.10.27
Translated Amino Acid sequence 
SYLEYLHITKFKMDEDYEQTLLVKKECFIYRIPPRPSASGYKAQDWDPSSFIWTGRLVIV
ARGENCVIRFEDPNNGEIFAQCPFDQNSVEPVVDSSRYFVIRIKDGERHAFVGMGFTDRD
DAFEFNATLQDHQNYIKNKKDIEIQRRNYENEPKKDYSLKTGQTIHIPFKAPTSKAPAGN
NNNNNNKKNLPVLTGASGGGFLLSPPPPASSKTIQKPPQQNDFFSSPQQNNNNNNNNIFG
NDPFNFNSSPQQPQQPPQQQQQQNNNNSNNRNNNNSFDGFGDFSDFGNKSNNSNNNSFGN
NNNNDNNNFGNNNNNNLFSPPQQQQQQQQQQQQNNNQFGLTKFIH
Translated Amino Acid sequence (All Frames) 
Frame A:
SYLEYLHITKFKMDEDYEQTLLVKKECFIYRIPPRPSASGYKAQDWDPSSFIWTGRLVIV
ARGENCVIRFEDPNNGEIFAQCPFDQNSVEPVVDSSRYFVIRIKDGERHAFVGMGFTDRD
DAFEFNATLQDHQNYIKNKKDIEIQRRNYENEPKKDYSLKTGQTIHIPFKAPTSKAPAGN
NNNNNNKKNLPVLTGASGGGFLLSPPPPASSKTIQKPPQQNDFFSSPQQNNNNNNNNIFG
NDPFNFNSSPQQPQQPPQQQQQQNNNNSNNRNNNNSFDGFGDFSDFGNKSNNSNNNSFGN
NNNNDNNNFGNNNNNNLFSPPQQQQQQQQQQQQNNNQFGLTKFIH


Frame B:
hiwniyillnlkwmkimnkhf*skrnvlfiefhqdqvqvviklkigihlplfglad*ll*
qevkivlsdlkiqimvkslhnahliktllnqlsivvvil*lelkmvnvmhllewvspiem
mllnsmqlykiikiilkikkilkfkeeimkmnqrkiiv*rlvkqfifhlkhqlqkhqlei
iitiiikriyqf*qvqvvvvsfylhlhqllqklfknhlnkmissllhnkiiiitiiifle
mthlistlhhnnhnnhhnnnnnkiiiiviieiiitalmvlvtlaileiratiatiivlei
iiimiitileiiiittsfhhhnnnnnnnnnnnkiiinsv*lslfi


Frame C:
ifgiftyy*i*ng*rl*tntfsqkgmfyl*nstktkckwl*ssrlgsiflyldwqisycs
kr*klcyqi*rsk*w*nlctmpi*sklc*tscr**slfcn*n*rw*tscicwngfhr*r*
cf*iqcnftrsskly*k*kry*nskkkl*k*tkerl*fkdwsnnsysi*stnfkstswk*
**q***keftsfnrckwwwfpfiststsffknyskttstk*fllfsttk****q**yfwk
*pi*fqlfttttttttttttttk*******k***ql*wfw*l*rfwk*eqq*qq**fwk*
******qfwk****qplfttttttttttttttk**sirfn*vys
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF196 (VSF196Q) /CSM/VS/VSF1-D/VSF196Q.Seq.d/                        993   0.0
SHG142 (SHG142Q) /CSM/SH/SHG1-B/SHG142Q.Seq.d/                        993   0.0
VFH841 (VFH841Q) /CSM/VF/VFH8-B/VFH841Q.Seq.d/                        987   0.0
AFN416 (AFN416Q) /CSM/AF/AFN4-A/AFN416Q.Seq.d/                        888   0.0
SFF462 (SFF462Q) /CSM/SF/SFF4-C/SFF462Q.Seq.d/                        480   e-134
VSF850 (VSF850Q) /CSM/VS/VSF8-C/VSF850Q.Seq.d/                        111   2e-23
SSM385 (SSM385Q) /CSM/SS/SSM3-D/SSM385Q.Seq.d/                         60   7e-08
SFI557 (SFI557Q) /CSM/SF/SFI5-C/SFI557Q.Seq.d/                         38   0.26
SFG593 (SFG593Q) /CSM/SF/SFG5-D/SFG593Q.Seq.d/                         38   0.26
AFL625 (AFL625Q) /CSM/AF/AFL6-B/AFL625Q.Seq.d/                         38   0.26
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CZ547547|CZ547547.1 SRAA-aad74f06.g1 Strongyloides ratti whole genome shotgun library(SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    42   0.021  2
AC175159|AC175159.2 Bos taurus clone CH240-182D20, *** SEQUENCING IN PROGRESS ***, 42 unordered pieces.    50   0.10   1
AC155054|AC155054.2 Bos taurus clone CH240-7P10, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    50   0.10   1
AC140767|AC140767.2 Rattus norvegicus clone CH230-118M23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.22   2
AC139929|AC139929.2 Rattus norvegicus clone CH230-219C6, *** SEQUENCING IN PROGRESS ***, 54 unordered pieces.    36   0.23   2
DN729618|DN729618.1 CNB48-C02.y1d-s SHGC-CNB Gasterosteus aculeatus cDNA clone CNB48-C02 5', mRNA sequence.    48   0.40   1
CO517131|CO517131.1 s13dSG29G1200100_468808 Glandular trichomes Medicago sativa cDNA, mRNA sequence.    46   1.6    1
CO512157|CO512157.1 s13dSG34F0100011_108634 Glandular trichomes Medicago sativa cDNA, mRNA sequence.    46   1.6    1
DN545392|DN545392.1 1394442 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    46   1.6    1
DN544014|DN544014.1 1392906 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    46   1.6    1
dna update 2006. 3.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY223256_1(AY223256|pid:none) Schistosoma japonicum clone ZZD434...   155   2e-36
EZ000148_1(EZ000148|pid:none) TSA: Schistosoma japonicum SJCHGC0...   155   2e-36
AK220236_1(AK220236|pid:none) Mus musculus mRNA for mFLJ00061 pr...   155   2e-36
BC129007_1(BC129007|pid:none) Xenopus tropicalis hypothetical pr...   155   2e-36
BC072846_1(BC072846|pid:none) Xenopus laevis MGC80231 protein, m...   155   3e-36
BC079728_1(BC079728|pid:none) Xenopus laevis MGC83534 protein, m...   154   3e-36
BC054244_1(BC054244|pid:none) Xenopus laevis hypothetical protei...   154   3e-36
CR860591_1(CR860591|pid:none) Pongo abelii mRNA; cDNA DKFZp459G0...   154   5e-36
(Q5R630) RecName: Full=Adaptin ear-binding coat-associated prote...   154   5e-36
(P69682) RecName: Full=Adaptin ear-binding coat-associated prote...   154   6e-36
protein update 2009. 4.18
PSORT 

 psg: 0.37  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for SHG142 is cyt
5' end seq. ID SHG142F
5' end seq. 
>SHG142F.Seq
TCATATTTGGAATATTTACATATTACTAAATTTAAAATGGATGAAGATTATGAACAAACA
CTTTTAGTCAAAAAGGAATGTTTTATTTATAGAATTCCACCAAGACCAAGTGCAAGTGGT
TATAAAGCTCAAGATTGGGATCCATCTTCCTTTATTTGGACTGGCAGATTAGTTATTGTA
GCAAGAGGTGAAAATTGTGTTATCAGATTTGAAGATCCAAATAATGGTGAAATCTTTGCA
CAATGCCCATTTGATCAAAACTCTGTTGAACCAGTTGTCGATAGTAGTCGTTATTTTGTA
ATTAGAATTAAAGATGGTGAACGTCATGCATTTGTTGGAATGGGTTTCACCGATAGAGAT
GATGCTTTTGAATTCAATGCAACTTTACAAGATCATCAAAATTATATTAAAAATAAAAAA
GATATTGAAATTCAAAGAAGAAATTATGAAAATGAACCAAAGAAAGATTATAGTTTAAAG
ACTGGTCAAACAATTCATATTCCATTTAAAGCACCAACTTCAAAAGCACCAGCTGGAAAT
AATAATAACAATAATAATAAAAAGAATTTACCNNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID SHG142Z
3' end seq. 
>SHG142Z.Seq
NNNNNNNNNNCTGTTGAACCAGTTGTCGATAGTAGTCGTTATTTTGTAATTAGAATTAAA
GATGGTGAACGTCATGCATTTGTTGGAATGGGTTTCACCGATAGAGATGATGCTTTTGAA
TTCAATGCAACTTTACAAGATCATCAAAATTATATTAAAAATAAAAAAGATATTGAAATT
CAAAGAAGAAATTATGAAAATGAACCAAAGAAAGATTATAGTTTAAAGACTGGTCAAACA
ATTCATATTCCATTTAAAGCACCAACTTCAAAAGCACCAGCTGGAAATAATAATAACAAT
AATAATAAAAAGAATTTACCAGTTTTAACAGGTGCAAGTGGTGGTGGTTTCCTTTTATCT
CCACCTCCACCAGCTTCTTCAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTC
TCTTCTCCACAACAAAATAATAATAATAACAATAATAATATTTTTGGAAATGACCCATTT
AATTTCAACTCTTCACCACAACAACCACAACAACCACCACAACAACAACAACAACAAAAT
AATAATAATAGTAATAATAGAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGC
GATTTTGGAAATAAGAGCAACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAAT
GATAATAACAATTTTGGAAATAATAATAATAACAACCTCTTTTCACCACCACAACAACAA
CAACAACAACAACAACAACAACAACAAAATAATAATCAATTCGGTTTAACTAAGTTTATT
CATT
Length of 3' end seq. 784
Connected seq. ID SHG142P
Connected seq. 
>SHG142P.Seq
TCATATTTGGAATATTTACATATTACTAAATTTAAAATGGATGAAGATTATGAACAAACA
CTTTTAGTCAAAAAGGAATGTTTTATTTATAGAATTCCACCAAGACCAAGTGCAAGTGGT
TATAAAGCTCAAGATTGGGATCCATCTTCCTTTATTTGGACTGGCAGATTAGTTATTGTA
GCAAGAGGTGAAAATTGTGTTATCAGATTTGAAGATCCAAATAATGGTGAAATCTTTGCA
CAATGCCCATTTGATCAAAACTCTGTTGAACCAGTTGTCGATAGTAGTCGTTATTTTGTA
ATTAGAATTAAAGATGGTGAACGTCATGCATTTGTTGGAATGGGTTTCACCGATAGAGAT
GATGCTTTTGAATTCAATGCAACTTTACAAGATCATCAAAATTATATTAAAAATAAAAAA
GATATTGAAATTCAAAGAAGAAATTATGAAAATGAACCAAAGAAAGATTATAGTTTAAAG
ACTGGTCAAACAATTCATATTCCATTTAAAGCACCAACTTCAAAAGCACCAGCTGGAAAT
AATAATAACAATAATAATAAAAAGAATTTACC----------CTGTTGAACCAGTTGTCG
ATAGTAGTCGTTATTTTGTAATTAGAATTAAAGATGGTGAACGTCATGCATTTGTTGGAA
TGGGTTTCACCGATAGAGATGATGCTTTTGAATTCAATGCAACTTTACAAGATCATCAAA
ATTATATTAAAAATAAAAAAGATATTGAAATTCAAAGAAGAAATTATGAAAATGAACCAA
AGAAAGATTATAGTTTAAAGACTGGTCAAACAATTCATATTCCATTTAAAGCACCAACTT
CAAAAGCACCAGCTGGAAATAATAATAACAATAATAATAAAAAGAATTTACCAGTTTTAA
CAGGTGCAAGTGGTGGTGGTTTCCTTTTATCTCCACCTCCACCAGCTTCTTCAAAAACTA
TTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTCTCCACAACAAAATAATAATAATA
ACAATAATAATATTTTTGGAAATGACCCATTTAATTTCAACTCTTCACCACAACAACCAC
AACAACCACCACAACAACAACAACAACAAAATAATAATAATAGTAATAATAGAAATAATA
ATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTTTGGAAATAAGAGCAACAATAGCA
ACAATAATAGTTTTGGAAATAATAATAATAATGATAATAACAATTTTGGAAATAATAATA
ATAACAACCTCTTTTCACCACCACAACAACAACAACAACAACAACAACAACAACAACAAA
ATAATAATCAATTCGGTTTAACTAAGTTTATTCATT
Length of connected seq. 1346
Full length Seq ID SHG142E
Full length Seq. 
>SHG142E.Seq
TCATATTTGGAATATTTACATATTACTAAATTTAAAATGGATGAAGATTATGAACAAACA
CTTTTAGTCAAAAAGGAATGTTTTATTTATAGAATTCCACCAAGACCAAGTGCAAGTGGT
TATAAAGCTCAAGATTGGGATCCATCTTCCTTTATTTGGACTGGCAGATTAGTTATTGTA
GCAAGAGGTGAAAATTGTGTTATCAGATTTGAAGATCCAAATAATGGTGAAATCTTTGCA
CAATGCCCATTTGATCAAAACTCTGTTGAACCAGTTGTCGATAGTAGTCGTTATTTTGTA
ATTAGAATTAAAGATGGTGAACGTCATGCATTTGTTGGAATGGGTTTCACCGATAGAGAT
GATGCTTTTGAATTCAATGCAACTTTACAAGATCATCAAAATTATATTAAAAATAAAAAA
GATATTGAAATTCAAAGAAGAAATTATGAAAATGAACCAAAGAAAGATTATAGTTTAAAG
ACTGGTCAAACAATTCATATTCCATTTAAAGCACCAACTTCAAAAGCACCAGCTGGAAAT
AATAATAACAATAATAATAAAAAGAATTTACCAGTTTTAACAGGTGCAAGTGGTGGTGGT
TTCCTTTTATCTCCACCTCCACCAGCTTCTTCAAAAACTATTCAAAAACCACCTCAACAA
AATGATTTCTTCTCTTCTCCACAACAAAATAATAATAATAACAATAATAATATTTTTGGA
AATGACCCATTTAATTTCAACTCTTCACCACAACAACCACAACAACCACCACAACAACAA
CAACAACAAAATAATAATAATAGTAATAATAGAAATAATAATAACAGCTTTGATGGTTTT
GGTGACTTTAGCGATTTTGGAAATAAGAGCAACAATAGCAACAATAATAGTTTTGGAAAT
AATAATAATAATGATAATAACAATTTTGGAAATAATAATAATAACAACCTCTTTTCACCA
CCACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAATCAATTCGGTTTA
ACTAAGTTTATTCATT
Length of full length seq. 1036