SHG137
Library SH
(Link to library)
Clone ID SHG137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHG137P
(Link to Original site)
Representative DNA sequence
>SHG137 (SHG137Q) /CSM/SH/SHG1-B/SHG137Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTGCTGTAAATAAATCATATAATTTTTCAACATACATATATATATAT
ATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAA
ACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTA
GCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATA
TTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCC
AAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAA
GTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGAC
CATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGT
GCAACCAAAGAXXXXXXXXXXTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTAT
TGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGG
ATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCA
TTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTG
GTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATT
TCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAG
AAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATC
AAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATG
ATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAAC
TTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAA
AAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTT
CTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence
ink**lkfayikeikifyfl*tyyfavnksynfstyiyiyiflk*NKIKMSFNPEEFTDK
TNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLA
KQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAG
ATK---

---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN
LGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS
IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI
LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkikn


Translated Amino Acid sequence (All Frames)
Frame A:
ink**lkfayikeikifyfl*tyyfavnksynfstyiyiyiflk*NKIKMSFNPEEFTDK
TNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLA
KQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAG
ATK---

---*lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pq
i*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfi
vlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvns
slvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkkllnkkk*ki

Frame B:
linnn*nlhi*kk*kffifckhiill*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
qpk---

---n*srqkktiqcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlk
fr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*
yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**th
pww*ikrksrcccq*krsssql*yyrfktttttssfsnqktkny*ikknkk*

Frame C:
**iiikiciykrnknflffvnilfcck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
nqr---

---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN
LGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS
IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI
LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkikn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/ 1283 0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/ 1283 0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/ 1283 0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/ 1283 0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/ 1283 0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/ 1283 0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/ 1283 0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1283 0.0
SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/ 1283 0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/ 1283 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence. 80 1e-12 2
BH165696|BH165696.1 ENTTP28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH164508|BH164508.1 ENTTD23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH163900|BH163900.1 ENTSJ80TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH163033|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH161826|BH161826.1 ENTRN55TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH159060|BH159060.1 ENTTR44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH158420|BH158420.1 ENTRY44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH156349|BH156349.1 ENTRL93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
BH149144|BH149144.1 ENTQQ09TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
dna update 2006. 3.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par... 216 1e-54
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ... 216 2e-54
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par... 216 2e-54
(Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 216 2e-54
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote... 215 2e-54
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par... 214 4e-54
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)... 214 5e-54
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25... 214 5e-54
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei... 214 6e-54
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM... 214 6e-54
protein update 2009. 4.18
PSORT

psg: 0.63 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
44.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SHG137 is nuc

5' end seq. ID SHG137F
5' end seq.
>SHG137F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTGCTGTAAATAAATCATATAATTTTTCAACATACATATATATATAT
ATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAA
ACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTA
GCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATA
TTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCC
AAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAA
GTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGAC
CATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGT
GCAACCAAAGANNNNNNNNNN
Length of 5' end seq. 561
3' end seq. ID SHG137Z
3' end seq.
>SHG137Z.Seq
NNNNNNNNNNTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAA
GTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGT
CTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCA
AATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCT
TTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAG
TTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCAT
AGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCT
TTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTT
GGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTC
ATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCAT
CTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAA
AAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAA
Length of 3' end seq. 698
Connected seq. ID SHG137P
Connected seq.
>SHG137P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTGCTGTAAATAAATCATATAATTTTTCAACATACATATATATATAT
ATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAA
ACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTA
GCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATA
TTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCC
AAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAA
GTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGAC
CATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGT
GCAACCAAAGA----------TAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTAT
TGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGG
ATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCA
TTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTG
GTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATT
TCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAG
AAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATC
AAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATG
ATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAAC
TTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAA
AAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTT
CTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAA
Length of connected seq. 1239
Full length Seq ID -
Full length Seq. -
Length of full length seq. -