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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG126
Library SH
(Link to library)
Clone ID SHG126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11212-1
Original site URL
Representative seq. ID SHG126P
(Link to Original site)
Representative DNA sequence 
>SHG126 (SHG126Q) /CSM/SH/SHG1-B/SHG126Q.Seq.d/
ATTAAATTAATTCCTTTCTTTTTTTAATTTATGGTGAAAGATATTGATTTCACCAATTAG
AAGAATAAAGGATGAATTTAAATTTCAATTCTACCCAATTAATGAATGAGAATTTCAATG
ATGGAGATTATAGCGGATACAATAATGGAGGTATGATGATGAATAATAATAATAATAATA
ATCATAATAATCATAATAATAATCATAATAGTGGAATGAATGATATGAGAAATCAAATTG
AGGATAGAATATTTGAATTAGAGAAAATTGAATATAATAAAGATGGTATCACATCAATTG
TAGTAAATAATGGTAAAATGGCAATGACAACAAGAAATAATTATATCATTCGTTTGGATT
TAGCTGATTCTATACCCTATGAAATTAAAATGAATAGTGATATTTATAAAATATTTTGTG
ATCCTACAGGTAATCATATGGTTATTTGTATGACAAATGAAGAGATTTATTATTTACATA
CACAATCAACATCAAGAAAACCAAAACAATTAAAGATTAAAGTCGATTTAATTGAATCAA
TTGCATGGGATCCAGCTGGTGATAAAAATAATGTTCAAACAATTTTAATTGGTACXXXXX
XXXXXTGGCATTATTGGTCGATATTGATTTAGCAAAAGAGAATGCCGATAAAGTTAGAGA
TACCGATGAAGAATTATGTAAAAAACTTTGGTTACGTATTGCTGAACATCAAGTAAAGAA
AGATGGTAATATCAAAGAGGCAATGGAATTCTTAAAGGCATGTTCATTATTGAAGATTGA
AGATATCTTACCATTCTTTCCAAATTTCACTGTTATCGATGACTTTAAAGAGGAAATTTG
CAAATCATTGGAAGATTACAATTCATATATCGATGAATTAAAGGCTGCAATGGATGATGC
TACAAAATCGGCTCAACAAATTCGTAAGGATATTCAAAATCTACGTAATAAATATGGTCA
TGTTAGAGGCGATCAAAAATGTGATATCTGTAATTATCCAGTTTTAACCAAACGTTTCTA
TCTCTTCTCTTGTAAACATGTTTTCCATAGCGATTGTTTAATCACTCAATTGATGAAACA
TCTCTCACCAATGCAAAAACAAAGAATTAGAGAGTTGGAAATGAATATTGGTCATAATCA
TATCGATCTTCTTTCTCAAGGCGCTCAAAATAATCAAAATCCTGTAATTAGTAATATCTC
TTCTATACTTGGTAATATTTCAGGAGGTGCTAATCAAGCTCAAGGTGATGAAAATGAAAA
TGTTTCTCAAGAAGACTTGGATCGTAATGAATTAGATAGAATGGTTGGTAAAGAATGCTT
ATATTGTGGGATATAAGATTAGATCAATGAACAACCTTTTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
*insflfliygery*fhqlee*RMNLNFNSTQLMNENFNDGDYSGYNNGGMMMNNNNNNN
HNNHNNNHNSGMNDMRNQIEDRIFELEKIEYNKDGITSIVVNNGKMAMTTRNNYIIRLDL
ADSIPYEIKMNSDIYKIFCDPTGNHMVICMTNEEIYYLHTQSTSRKPKQLKIKVDLIESI
AWDPAGDKNNVQTILIG---

---ALLVDIDLAKENADKVRDTDEELCKKLWLRIAEHQVKKDGNIKEAMEFLKACSLLKI
EDILPFFPNFTVIDDFKEEICKSLEDYNSYIDELKAAMDDATKSAQQIRKDIQNLRNKYG
HVRGDQKCDICNYPVLTKRFYLFSCKHVFHSDCLITQLMKHLSPMQKQRIRELEMNIGHN
HIDLLSQGAQNNQNPVISNISSILGNISGGANQAQGDENENVSQEDLDRNELDRMVGKEC
LYCGI*d*ineqpf
Translated Amino Acid sequence (All Frames) 
Frame A:
iklipfff*fmvkdidftn*knkg*i*isilpn**mrismmeiiadtimev***iiiiii
iiiiiiiiiive*mi*eiklrieyln*rklniikmvshql**imvkwq*qqeiiisfvwi
*lilypmklk*ivifikyfvilqviiwlfv*qmkrfiiyihnqhqenqnn*rlksi*lnq
lhgiqlvikimfkqf*lv---

---whywsili*qkrmpikleipmknyvknfgyvllnik*rkmviskrqwns*rhvhy*r
lkisyhsfqisllsmtlkrkfanhwkitihismn*rlqwmmlqnrlnkfvrifkiyvinm
vmleaiknvisviiqf*pnvsisslvnmfsiaiv*sln**nishqcknkeleswk*ilvi
iisifflkalkiikil*lvisllylvifqevliklkvmkmkmflkktwivmn*iewlvkn
ayivgykirsmnnll

Frame B:
ln*flsffnlw*kilispirrikdefkfqfypine*efq*wrl*riq*wrydde******
s**s***s**wne*yeksn*g*ni*iren*i**rwyhincsk*w*ngndnkk*lyhsfgf
s*fytl*n*ne**yl*nil*syr*sygylydk*rdllftytinikktktikd*srfn*in
cmgssw**k*csnnfnwy---

---giigry*fskrecr*s*ryr*rim*ktlvtyc*tsskerw*yqrgngilkgmfiied
*ryltilskfhcyr*l*rgnlqiigrlqfiyr*ikgcng*cykigstns*gyskst**iw
sc*rrskm*yl*lssfnqtflslll*tcfp*rlfnhsidetsltnaktkn*rvgneyws*
syrssfsrrsk*skscn**ylfytw*yfrrc*sssr**k*kcfsrrlgs**ir*ngw*rm
lilwdirldq*ttfy

Frame C:
*insflfliygery*fhqlee*RMNLNFNSTQLMNENFNDGDYSGYNNGGMMMNNNNNNN
HNNHNNNHNSGMNDMRNQIEDRIFELEKIEYNKDGITSIVVNNGKMAMTTRNNYIIRLDL
ADSIPYEIKMNSDIYKIFCDPTGNHMVICMTNEEIYYLHTQSTSRKPKQLKIKVDLIESI
AWDPAGDKNNVQTILIG---

---ALLVDIDLAKENADKVRDTDEELCKKLWLRIAEHQVKKDGNIKEAMEFLKACSLLKI
EDILPFFPNFTVIDDFKEEICKSLEDYNSYIDELKAAMDDATKSAQQIRKDIQNLRNKYG
HVRGDQKCDICNYPVLTKRFYLFSCKHVFHSDCLITQLMKHLSPMQKQRIRELEMNIGHN
HIDLLSQGAQNNQNPVISNISSILGNISGGANQAQGDENENVSQEDLDRNELDRMVGKEC
LYCGI*d*ineqpf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG126 (SHG126Q) /CSM/SH/SHG1-B/SHG126Q.Seq.d/                       2224   0.0
VHC879 (VHC879Q) /CSM/VH/VHC8-D/VHC879Q.Seq.d/                       1437   0.0
VHD320 (VHD320Q) /CSM/VH/VHD3-A/VHD320Q.Seq.d/                       1362   0.0
VHP306 (VHP306Q) /CSM/VH/VHP3-A/VHP306Q.Seq.d/                       1350   0.0
VHL220 (VHL220Q) /CSM/VH/VHL2-A/VHL220Q.Seq.d/                       1348   0.0
VHC229 (VHC229Q) /CSM/VH/VHC2-B/VHC229Q.Seq.d/                       1332   0.0
AHL301 (AHL301Q) /CSM/AH/AHL3-A/AHL301Q.Seq.d/                       1316   0.0
SHE738 (SHE738Q) /CSM/SH/SHE7-B/SHE738Q.Seq.d/                       1310   0.0
AHB810 (AHB810Q) /CSM/AH/AHB8-A/AHB810Q.Seq.d/                       1279   0.0
SHH467 (SHH467Q) /CSM/SH/SHH4-C/SHH467Q.Seq.d/                       1267   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF963125|CF963125.1 8317rsiced_11907.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence.    56   2e-06  3
AK101717|AK101717.1 Oryza sativa (japonica cultivar-group) cDNA clone:J033060O03, full insert sequence.    56   2e-06  2
CK047459|CK047459.1 48522rsiceh_18321.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence.    56   2e-06  2
AC177916|AC177916.2 Zea mays chromosome UNK clone CH201-139H4, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    52   5e-04  3
CB644640|CB644640.1 OSJNEb05P04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA clone OSJNEb05P04 5', mRNA sequence.    48   5e-04  2
BG833403|BG833403.1 951007H01.x3 951 - BMS tissue from Walbot Lab (GR) Zea mays cDNA, mRNA sequence.    44   5e-04  2
BG833402|BG833402.1 951007H01.x2 951 - BMS tissue from Walbot Lab (GR) Zea mays cDNA, mRNA sequence.    44   5e-04  2
BG833511|BG833511.1 951010A11.x1 951 - BMS tissue from Walbot Lab (GR) Zea mays cDNA, mRNA sequence.    44   5e-04  2
DV974170|DV974170.1 GQ027115.B3_C07 GQ099: Mixed spruce tissues Picea glauca cDNA clone GenomeQuebec_Id:GQ027115_C07 5', mRNA sequence.    58   6e-04  1
CD903466|CD903466.1 G356.110H15F010919 G356 Triticum aestivum cDNA clone G356110H15, mRNA sequence.    42   0.007  2
dna update 2006. 3.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506204_1(AF506204|pid:none) Danio rerio vacuolar protein sorti...   206   1e-51
(P59015) RecName: Full=Vacuolar protein sorting-associated prote...   206   1e-51
BC154756_1(BC154756|pid:none) Danio rerio vacuolar protein sorti...   204   7e-51
BC166213_1(BC166213|pid:none) Xenopus tropicalis hypothetical pr...   196   2e-48
BC073079_1(BC073079|pid:none) Xenopus laevis MGC82750 protein, m...   195   3e-48
BC150096_1(BC150096|pid:none) Bos taurus vacuolar protein sortin...   190   8e-47
BC026870_1(BC026870|pid:none) Mus musculus vacuolar protein sort...   189   2e-46
(Q8R307) RecName: Full=Vacuolar protein sorting-associated prote...   189   2e-46
BC169083_1(BC169083|pid:none) Rattus norvegicus vacuolar protein...   189   2e-46
AK029109_1(AK029109|pid:none) Mus musculus 10 days neonate skin ...   187   7e-46
protein update 2009. 4.18
PSORT 

 psg: 0.73  gvh: 0.07  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SHG126 is nuc
5' end seq. ID SHG126F
5' end seq. 
>SHG126F.Seq
ATTAAATTAATTCCTTTCTTTTTTTAATTTATGGTGAAAGATATTGATTTCACCAATTAG
AAGAATAAAGGATGAATTTAAATTTCAATTCTACCCAATTAATGAATGAGAATTTCAATG
ATGGAGATTATAGCGGATACAATAATGGAGGTATGATGATGAATAATAATAATAATAATA
ATCATAATAATCATAATAATAATCATAATAGTGGAATGAATGATATGAGAAATCAAATTG
AGGATAGAATATTTGAATTAGAGAAAATTGAATATAATAAAGATGGTATCACATCAATTG
TAGTAAATAATGGTAAAATGGCAATGACAACAAGAAATAATTATATCATTCGTTTGGATT
TAGCTGATTCTATACCCTATGAAATTAAAATGAATAGTGATATTTATAAAATATTTTGTG
ATCCTACAGGTAATCATATGGTTATTTGTATGACAAATGAAGAGATTTATTATTTACATA
CACAATCAACATCAAGAAAACCAAAACAATTAAAGATTAAAGTCGATTTAATTGAATCAA
TTGCATGGGATCCAGCTGGTGATAAAAATAATGTTCAAACAATTTTAATTGGTACNNNNN
NNNNN
Length of 5' end seq. 605
3' end seq. ID SHG126Z
3' end seq. 
>SHG126Z.Seq
NNNNNNNNNNTGGCATTATTGGTCGATATTGATTTAGCAAAAGAGAATGCCGATAAAGTT
AGAGATACCGATGAAGAATTATGTAAAAAACTTTGGTTACGTATTGCTGAACATCAAGTA
AAGAAAGATGGTAATATCAAAGAGGCAATGGAATTCTTAAAGGCATGTTCATTATTGAAG
ATTGAAGATATCTTACCATTCTTTCCAAATTTCACTGTTATCGATGACTTTAAAGAGGAA
ATTTGCAAATCATTGGAAGATTACAATTCATATATCGATGAATTAAAGGCTGCAATGGAT
GATGCTACAAAATCGGCTCAACAAATTCGTAAGGATATTCAAAATCTACGTAATAAATAT
GGTCATGTTAGAGGCGATCAAAAATGTGATATCTGTAATTATCCAGTTTTAACCAAACGT
TTCTATCTCTTCTCTTGTAAACATGTTTTCCATAGCGATTGTTTAATCACTCAATTGATG
AAACATCTCTCACCAATGCAAAAACAAAGAATTAGAGAGTTGGAAATGAATATTGGTCAT
AATCATATCGATCTTCTTTCTCAAGGCGCTCAAAATAATCAAAATCCTGTAATTAGTAAT
ATCTCTTCTATACTTGGTAATATTTCAGGAGGTGCTAATCAAGCTCAAGGTGATGAAAAT
GAAAATGTTTCTCAAGAAGACTTGGATCGTAATGAATTAGATAGAATGGTTGGTAAAGAA
TGCTTATATTGTGGGATATAAGATTAGATCAATGAACAACCTTTTAT
Length of 3' end seq. 767
Connected seq. ID SHG126P
Connected seq. 
>SHG126P.Seq
ATTAAATTAATTCCTTTCTTTTTTTAATTTATGGTGAAAGATATTGATTTCACCAATTAG
AAGAATAAAGGATGAATTTAAATTTCAATTCTACCCAATTAATGAATGAGAATTTCAATG
ATGGAGATTATAGCGGATACAATAATGGAGGTATGATGATGAATAATAATAATAATAATA
ATCATAATAATCATAATAATAATCATAATAGTGGAATGAATGATATGAGAAATCAAATTG
AGGATAGAATATTTGAATTAGAGAAAATTGAATATAATAAAGATGGTATCACATCAATTG
TAGTAAATAATGGTAAAATGGCAATGACAACAAGAAATAATTATATCATTCGTTTGGATT
TAGCTGATTCTATACCCTATGAAATTAAAATGAATAGTGATATTTATAAAATATTTTGTG
ATCCTACAGGTAATCATATGGTTATTTGTATGACAAATGAAGAGATTTATTATTTACATA
CACAATCAACATCAAGAAAACCAAAACAATTAAAGATTAAAGTCGATTTAATTGAATCAA
TTGCATGGGATCCAGCTGGTGATAAAAATAATGTTCAAACAATTTTAATTGGTAC-----
-----TGGCATTATTGGTCGATATTGATTTAGCAAAAGAGAATGCCGATAAAGTTAGAGA
TACCGATGAAGAATTATGTAAAAAACTTTGGTTACGTATTGCTGAACATCAAGTAAAGAA
AGATGGTAATATCAAAGAGGCAATGGAATTCTTAAAGGCATGTTCATTATTGAAGATTGA
AGATATCTTACCATTCTTTCCAAATTTCACTGTTATCGATGACTTTAAAGAGGAAATTTG
CAAATCATTGGAAGATTACAATTCATATATCGATGAATTAAAGGCTGCAATGGATGATGC
TACAAAATCGGCTCAACAAATTCGTAAGGATATTCAAAATCTACGTAATAAATATGGTCA
TGTTAGAGGCGATCAAAAATGTGATATCTGTAATTATCCAGTTTTAACCAAACGTTTCTA
TCTCTTCTCTTGTAAACATGTTTTCCATAGCGATTGTTTAATCACTCAATTGATGAAACA
TCTCTCACCAATGCAAAAACAAAGAATTAGAGAGTTGGAAATGAATATTGGTCATAATCA
TATCGATCTTCTTTCTCAAGGCGCTCAAAATAATCAAAATCCTGTAATTAGTAATATCTC
TTCTATACTTGGTAATATTTCAGGAGGTGCTAATCAAGCTCAAGGTGATGAAAATGAAAA
TGTTTCTCAAGAAGACTTGGATCGTAATGAATTAGATAGAATGGTTGGTAAAGAATGCTT
ATATTGTGGGATATAAGATTAGATCAATGAACAACCTTTTAT
Length of connected seq. 1352
Full length Seq ID -
Full length Seq. -
Length of full length seq. -