SHG115
Library SH
(Link to library)
Clone ID SHG115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15287-1|Contig-U15561-1
Original site URL
Representative seq. ID SHG115P
(Link to Original site)
Representative DNA sequence
>SHG115 (SHG115Q) /CSM/SH/SHG1-A/SHG115Q.Seq.d/
ATTAAATAGAGGTAGAATTAGTAGAGCTCAACATTCAAATGCTGCCATTCAAGAACCTAA
AATTCCACATTATAAACAACCAATGAAAGTCGAATATAAAGTTGAAAAGATTAATGTTTG
TAAGGTTGGTTTATTCTATCATGTTGTATCAAATAATTGGCAAGGTGTTGCCTATATTAT
GTTGGACTCTGGTTTAGATAATTTCAGTGCACTTCATGATGCATTCAAAGCTGATAAATA
TCAATTGGCTCTAACTTTATTATCAAAATGTCGTTCAGCTGCTGAATTATCACCATTATC
ACCAGAATCAAAACAAAACCTTTTCCATTTCATTGGTATGTACCCATCATCTGTTGCCAA
TTGGAGTGCTCGTGTTCAACAAAAATTATTATCATCTGGTGTTTCACCAAATCTCACTGA
TTCCACTGGTAGAACTCCACTTCACTATGCAGCTGTCTCTGAAAATGTTCCATTCACTCA
ATTCTTATTGACTCAAAAATTAAACATTAATCAACAAGATAAGGAAGGTAATACACCATT
ATCATTGGCATTGATAAAGATTAAAACTCCAACTXXXXXXXXXXTTACAAAACTTGGATG
AACTTGAGACCGTTTCAAAGATTTTGATTGCCGCTCACCAAAATACCACAATGCATCCAT
ACGATTATTGTTTCAAAGCTCTTGGTGCCTCTTTGGAGAAATTGGATGCCAACTCTCCAG
AATTTGGTATCCTTAAAAAGTACTCCGAGAATACCGGTTGCACAAAGAAGATTGTAAATA
TTTTCAAACTCCAAAGAAAAGGAGAGGTTGAAAGATTCCAAGCTCATAAAAATCTCAAGA
ATCATTTCCTACTATGGCATGGTAGTTTAACAACAAACTATCTCTCCATTTTATCTCAAG
GCTTAAAGATTGCTCCACCAGAGGCTCCAGTCACTGGTTATATGTTTGGTAAAGGTATTT
ATTTCTCTGATATGTTTAGAAAATCTATAAACTATTGCGGTAGTTGGGATAGTTCTTCAG
CAAATAGTTTCCTCTTACTCTCAGAGGTAGCTTTGGGTACAATGAAAGAATTTAAAAGCG
CTCACTATATGGAATCCCCTGAAACTGGTACAAATAGTACTAAAGGTGTAGGTAAAACTG
GTCCAAACTTTGACGATAGTATCATTTTAAATAATGGTGTTGCAATTCCTCTCTCTCCTC
CAGAACAAGTTAAAGGTGATACTTCCGATTATCACTTGAAAATGAATGAATATATTGTTT
ATGACGTTTCTCAAATTAGAATGAGATATTTAGTNAAGTTTCAAATTAAAAAAAAATTAA
ANA
sequence update 2002.10.25
Translated Amino Acid sequence
LNRGRISRAQHSNAAIQEPKIPHYKQPMKVEYKVEKINVCKVGLFYHVVSNNWQGVAYIM
LDSGLDNFSALHDAFKADKYQLALTLLSKCRSAAELSPLSPESKQNLFHFIGMYPSSVAN
WSARVQQKLLSSGVSPNLTDSTGRTPLHYAAVSENVPFTQFLLTQKLNINQQDKEGNTPL
SLALIKIKTPT---

---LQNLDELETVSKILIAAHQNTTMHPYDYCFKALGASLEKLDANSPEFGILKKYSENT
GCTKKIVNIFKLQRKGEVERFQAHKNLKNHFLLWHGSLTTNYLSILSQGLKIAPPEAPVT
GYMFGKGIYFSDMFRKSINYCGSWDSSSANSFLLLSEVALGTMKEFKSAHYMESPETGTN
STKGVGKTGPNFDDSIILNNGVAIPLSPPEQVKGDTSDYHLKMNEYIVYDVSQIRMRYLV
KFQIKKKLX


Translated Amino Acid sequence (All Frames)
Frame A:
ik*r*n**sstfkcchsrt*nstl*ttnesri*s*kd*cl*gwfilsccik*larcclyy
vglwfr*fqcts*ciqs**isigsnfiikmsfsc*iitiitriktkpfpfhwyvpiiccq
lecscstkiiiiwcftksh*fhw*nstslcscl*kcsihsilidskikh*str*gr*yti
iigidkd*nsn---

---LQNLDELETVSKILIAAHQNTTMHPYDYCFKALGASLEKLDANSPEFGILKKYSENT
GCTKKIVNIFKLQRKGEVERFQAHKNLKNHFLLWHGSLTTNYLSILSQGLKIAPPEAPVT
GYMFGKGIYFSDMFRKSINYCGSWDSSSANSFLLLSEVALGTMKEFKSAHYMESPETGTN
STKGVGKTGPNFDDSIILNNGVAIPLSPPEQVKGDTSDYHLKMNEYIVYDVSQIRMRYLV
KFQIKKKLX

Frame B:
LNRGRISRAQHSNAAIQEPKIPHYKQPMKVEYKVEKINVCKVGLFYHVVSNNWQGVAYIM
LDSGLDNFSALHDAFKADKYQLALTLLSKCRSAAELSPLSPESKQNLFHFIGMYPSSVAN
WSARVQQKLLSSGVSPNLTDSTGRTPLHYAAVSENVPFTQFLLTQKLNINQQDKEGNTPL
SLALIKIKTPT---

---yktwmnlrpfqrf*lpltkipqcihtiivskllvplwrnwmptlqnlvslkstprip
vaqrrl*ifsnskekerlkdsklikisriisyygmvv*qqtispfylka*rllhqrlqsl
viclvkvfisliclenl*tiavvgivlqqivssysqr*lwvq*knlkaltiwnplklvqi
vlkv*vklvqtltivsf*imvlqflsllqnklkvilpiit*k*mnilfmtflkle*di*x
sfklkkn*x

Frame C:
*ievelvelniqmlpfknlkfhiinnq*ksniklkrlmfvrlvysimlyqiigkvlpilc
wtlv*iisvhfmmhsklininwl*lyyqnvvqllnyhhyhqnqnktfsislvcthhllpi
gvlvfnknyyhlvfhqisliplvelhftmqlslkmfhslnsy*lkn*tlinkirkvihhy
hwh**rlklq---

---tklg*t*drfkdfdcrspkyhnasirllfqsswclfgeigcqlsriwyp*kvlreyr
lhkedckyfqtpkkrrg*kipss*ksqesfptmaw*fnnklslhfisrlkdcstrgsshw
lyvw*rylfl*yv*kiykllr*lg*ffsk*fpltlrgsfgyneri*krslygip*nwyk*
y*rcr*nwskl*r*yhfk*wccnsslssrts*r*yfrlslene*iycl*rfsn*neifsx
vsn*kkik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG115 (SHG115Q) /CSM/SH/SHG1-A/SHG115Q.Seq.d/ 2526 0.0
AHA138 (AHA138Q) /CSM/AH/AHA1-B/AHA138Q.Seq.d/ 1419 0.0
VFI522 (VFI522Q) /CSM/VF/VFI5-A/VFI522Q.Seq.d/ 1411 0.0
SHD538 (SHD538Q) /CSM/SH/SHD5-B/SHD538Q.Seq.d/ 1411 0.0
AHN647 (AHN647Q) /CSM/AH/AHN6-B/AHN647Q.Seq.d/ 1398 0.0
SLB163 (SLB163Q) /CSM/SL/SLB1-C/SLB163Q.Seq.d/ 1225 0.0
AFD220 (AFD220Q) /CSM/AF/AFD2-A/AFD220Q.Seq.d/ 1148 0.0
VHD729 (VHD729Q) /CSM/VH/VHD7-B/VHD729Q.Seq.d/ 1118 0.0
VHF647 (VHF647Q) /CSM/VH/VHF6-B/VHF647Q.Seq.d/ 1116 0.0
SSM827 (SSM827Q) /CSM/SS/SSM8-B/SSM827Q.Seq.d/ 1114 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ534950|AJ534950.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-3 (adprt-3 gene). 1400 0.0 1
CX587668|CX587668.1 TTE00026641 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-11 2
CX585596|CX585596.1 TTE00021875 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-11 2
CX587195|CX587195.1 TTE00021029 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-11 2
CX590527|CX590527.1 TTE00031180 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 76 2e-11 2
DV613566|0 70 1e-07 1
DY229813|DY229813.1 ID0AAK8YC07CM1 ApHL3SD Acyrthosiphon pisum cDNA clone ID0AAK8YC07 5', mRNA sequence. 66 2e-06 1
DV316421|DV316421.1 NABOI60TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOI60, mRNA sequence. 58 5e-04 1
DV316420|DV316420.1 NABOI60T1O Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOI60, mRNA sequence. 58 5e-04 1
DV298771|DV298771.1 NABPS65TR Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABPS65, mRNA sequence. 58 5e-04 1
dna update 2006. 3.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ534950_1(AJ534950|pid:none) Dictyostelium discoideum mRNA for ... 482 e-134
(Q11208) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 200 8e-50
BT034831_1(BT034831|pid:none) Zea mays full-length cDNA clone ZM... 198 4e-49
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl... 197 7e-49
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA... 197 7e-49
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF... 197 7e-49
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym... 197 7e-49
M18112_1(M18112|pid:none) Human poly(ADP-ribose) polymerase mRNA... 197 7e-49
AK166104_1(AK166104|pid:none) Mus musculus lung RCB-0558 LLC cDN... 197 7e-49
X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 197 9e-49
protein update 2009. 4.18
PSORT

psg: 0.72 gvh: 0.34 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for SHG115 is nuc

5' end seq. ID SHG115F
5' end seq.
>SHG115F.Seq
ATTAAATAGAGGTAGAATTAGTAGAGCTCAACATTCAAATGCTGCCATTCAAGAACCTAA
AATTCCACATTATAAACAACCAATGAAAGTCGAATATAAAGTTGAAAAGATTAATGTTTG
TAAGGTTGGTTTATTCTATCATGTTGTATCAAATAATTGGCAAGGTGTTGCCTATATTAT
GTTGGACTCTGGTTTAGATAATTTCAGTGCACTTCATGATGCATTCAAAGCTGATAAATA
TCAATTGGCTCTAACTTTATTATCAAAATGTCGTTCAGCTGCTGAATTATCACCATTATC
ACCAGAATCAAAACAAAACCTTTTCCATTTCATTGGTATGTACCCATCATCTGTTGCCAA
TTGGAGTGCTCGTGTTCAACAAAAATTATTATCATCTGGTGTTTCACCAAATCTCACTGA
TTCCACTGGTAGAACTCCACTTCACTATGCAGCTGTCTCTGAAAATGTTCCATTCACTCA
ATTCTTATTGACTCAAAAATTAAACATTAATCAACAAGATAAGGAAGGTAATACACCATT
ATCATTGGCATTGATAAAGATTAAAACTCCAACTNNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID SHG115Z
3' end seq.
>SHG115Z.Seq
NNNNNNNNNNTTACAAAACTTGGATGAACTTGAGACCGTTTCAAAGATTTTGATTGCCGC
TCACCAAAATACCACAATGCATCCATACGATTATTGTTTCAAAGCTCTTGGTGCCTCTTT
GGAGAAATTGGATGCCAACTCTCCAGAATTTGGTATCCTTAAAAAGTACTCCGAGAATAC
CGGTTGCACAAAGAAGATTGTAAATATTTTCAAACTCCAAAGAAAAGGAGAGGTTGAAAG
ATTCCAAGCTCATAAAAATCTCAAGAATCATTTCCTACTATGGCATGGTAGTTTAACAAC
AAACTATCTCTCCATTTTATCTCAAGGCTTAAAGATTGCTCCACCAGAGGCTCCAGTCAC
TGGTTATATGTTTGGTAAAGGTATTTATTTCTCTGATATGTTTAGAAAATCTATAAACTA
TTGCGGTAGTTGGGATAGTTCTTCAGCAAATAGTTTCCTCTTACTCTCAGAGGTAGCTTT
GGGTACAATGAAAGAATTTAAAAGCGCTCACTATATGGAATCCCCTGAAACTGGTACAAA
TAGTACTAAAGGTGTAGGTAAAACTGGTCCAAACTTTGACGATAGTATCATTTTAAATAA
TGGTGTTGCAATTCCTCTCTCTCCTCCAGAACAAGTTAAAGGTGATACTTCCGATTATCA
CTTGAAAATGAATGAATATATTGTTTATGACGTTTCTCAAATTAGAATGAGATATTTAGT
NAAGTTTCAAATTAAAAAAAAATTAAANA
Length of 3' end seq. 749
Connected seq. ID SHG115P
Connected seq.
>SHG115P.Seq
ATTAAATAGAGGTAGAATTAGTAGAGCTCAACATTCAAATGCTGCCATTCAAGAACCTAA
AATTCCACATTATAAACAACCAATGAAAGTCGAATATAAAGTTGAAAAGATTAATGTTTG
TAAGGTTGGTTTATTCTATCATGTTGTATCAAATAATTGGCAAGGTGTTGCCTATATTAT
GTTGGACTCTGGTTTAGATAATTTCAGTGCACTTCATGATGCATTCAAAGCTGATAAATA
TCAATTGGCTCTAACTTTATTATCAAAATGTCGTTCAGCTGCTGAATTATCACCATTATC
ACCAGAATCAAAACAAAACCTTTTCCATTTCATTGGTATGTACCCATCATCTGTTGCCAA
TTGGAGTGCTCGTGTTCAACAAAAATTATTATCATCTGGTGTTTCACCAAATCTCACTGA
TTCCACTGGTAGAACTCCACTTCACTATGCAGCTGTCTCTGAAAATGTTCCATTCACTCA
ATTCTTATTGACTCAAAAATTAAACATTAATCAACAAGATAAGGAAGGTAATACACCATT
ATCATTGGCATTGATAAAGATTAAAACTCCAACT----------TTACAAAACTTGGATG
AACTTGAGACCGTTTCAAAGATTTTGATTGCCGCTCACCAAAATACCACAATGCATCCAT
ACGATTATTGTTTCAAAGCTCTTGGTGCCTCTTTGGAGAAATTGGATGCCAACTCTCCAG
AATTTGGTATCCTTAAAAAGTACTCCGAGAATACCGGTTGCACAAAGAAGATTGTAAATA
TTTTCAAACTCCAAAGAAAAGGAGAGGTTGAAAGATTCCAAGCTCATAAAAATCTCAAGA
ATCATTTCCTACTATGGCATGGTAGTTTAACAACAAACTATCTCTCCATTTTATCTCAAG
GCTTAAAGATTGCTCCACCAGAGGCTCCAGTCACTGGTTATATGTTTGGTAAAGGTATTT
ATTTCTCTGATATGTTTAGAAAATCTATAAACTATTGCGGTAGTTGGGATAGTTCTTCAG
CAAATAGTTTCCTCTTACTCTCAGAGGTAGCTTTGGGTACAATGAAAGAATTTAAAAGCG
CTCACTATATGGAATCCCCTGAAACTGGTACAAATAGTACTAAAGGTGTAGGTAAAACTG
GTCCAAACTTTGACGATAGTATCATTTTAAATAATGGTGTTGCAATTCCTCTCTCTCCTC
CAGAACAAGTTAAAGGTGATACTTCCGATTATCACTTGAAAATGAATGAATATATTGTTT
ATGACGTTTCTCAAATTAGAATGAGATATTTAGTNAAGTTTCAAATTAAAAAAAAATTAA
ANA
Length of connected seq. 1313
Full length Seq ID -
Full length Seq. -
Length of full length seq. -