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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG107
Library SH
(Link to library)
Clone ID SHG107
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15541-1
Original site URL
Representative seq. ID SHG107P
(Link to Original site)
Representative DNA sequence 
>SHG107 (SHG107Q) /CSM/SH/SHG1-A/SHG107Q.Seq.d/
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAAT
CATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAA
AACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTA
CAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAA
AGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCT
ATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATC
CCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAA
ACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAXXXXXXXXXXTGGA
TGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAA
TGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCTCGTGC
TTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGTGATCT
CACCAATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGTGATAT
CGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATTCTTCA
TCAAGCCTCTACCACTGAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAAACTAT
CTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAGAGTGATAATCAAATCGAAGAACT
CAATCAATACATCAATCCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCAGAACG
TTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCTATGGG
TGATAGTATTAGAAATCTTTTAAGCAACAAAATAATTAGAGAATTTGTAAACAATGGTAT
TCAAAAAGGTATACCATATGCGATTATGCNATTTATCAATTTTTCCAAAAAAACATAATT
TCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
d*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDV
QIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVA
IVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMS---

---DADFEPYFSNFLPILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLI
VSDLTNPKLSMNAKPSAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNEL
RETIFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLA
QAMGDSIRNLLSNKIIREFVNNGIQKGIPYAIMXFINFSKKT*fq
Translated Amino Acid sequence (All Frames) 
Frame A:
d*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDV
QIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVA
IVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMS---

---wmlisnltfqisfqsl*tssrmsilvp*qtlqlvslvi*lvllvrnslvfalksfh*
slvispiqnsl*mlnqvlsvvsvisplvlvpisflsfqwlcqffikplplksmmktf*mn
svklsskltlvsfkvsrviiksknsintsiqc*tllyl*mmiqnvmilllllpwpylvi*
lklwvivleif*atk*lenl*tmvfkkvyhmrlcxlsifpkkhnfk

Frame B:
tnitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqmkremy
kfvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkhvtl*l
l*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkhlvifvkkliqmlcq---

---gc*frtllfkfpsnpcklpqecrfwfrnkhcnwyrw*fsscfw*eilwclr*nrsid
r**shqsktlyec*tkcyqlsl*yrh*cwcrfhsfpsngyansssslyh*nr**rlfk*t
p*nylpnlhwyhsrsqe**snrrtqsihqsnvrlcctyk**srtl*fcyfcclgltw*fs
ssyg**y*ksfkqqnn*rickqwyskryticdyaiyqffqkniis

Frame C:
li*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk*rerct
nssisrycfke*ysl*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*stshcsy
cnftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssntwlyl*rn*skcyv---

---DADFEPYFSNFLPILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLI
VSDLTNPKLSMNAKPSAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNEL
RETIFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLA
QAMGDSIRNLLSNKIIREFVNNGIQKGIPYAIMXFINFSKKT*fq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG107 (SHG107Q) /CSM/SH/SHG1-A/SHG107Q.Seq.d/                       2286   0.0
VHP288 (VHP288Q) /CSM/VH/VHP2-D/VHP288Q.Seq.d/                       1275   0.0
VHN677 (VHN677Q) /CSM/VH/VHN6-D/VHN677Q.Seq.d/                       1275   0.0
VHN621 (VHN621Q) /CSM/VH/VHN6-A/VHN621Q.Seq.d/                       1275   0.0
VHK714 (VHK714Q) /CSM/VH/VHK7-A/VHK714Q.Seq.d/                       1275   0.0
VHK478 (VHK478Q) /CSM/VH/VHK4-D/VHK478Q.Seq.d/                       1275   0.0
VHK437 (VHK437Q) /CSM/VH/VHK4-B/VHK437Q.Seq.d/                       1275   0.0
VHA692 (VHA692Q) /CSM/VH/VHA6-D/VHA692Q.Seq.d/                       1275   0.0
CHS419 (CHS419Q) /CSM/CH/CHS4-A/CHS419Q.Seq.d/                       1275   0.0
CHN342 (CHN342Q) /CSM/CH/CHN3-B/CHN342Q.Seq.d/                       1275   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP002799|AP002799.3 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-806N19.    38   0.26   2
AC024715|AC024715.3 Homo sapiens chromosome 11 clone RP11-201M22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38   0.26   2
AC183443|AC183443.2 Echinops telfairi clone CH238-96N19, WORKING DRAFT SEQUENCE, 7 ordered pieces.    48   0.47   1
CV740288|CV740288.1 SJAL_026_17.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
CV748470|CV748470.1 SJL_35_004__5-4__08.T7_012.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
CV737780|CV737780.1 SJAL_010_44.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
CV741544|CV741544.1 SJAL_033_76.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
BU802954|BU802954.1 SJFAPE03 SJF Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
AC118385|AC118385.4 Rattus norvegicus clone CH230-42B13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   1.9    1
CL715650|CL715650.1 OR_BBa0041J09.r OR_BBa Oryza rufipogon genomic clone OR_BBa0041J09 3', genomic survey sequence.    46   1.9    1
dna update 2006. 3.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo...   109   2e-22
AK229808_1(AK229808|pid:none) Arabidopsis thaliana mRNA for hypo...   106   2e-21
(O18388) RecName: Full=Importin subunit beta; AltName: Full=Kary...   105   2e-21
CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   105   2e-21
CP000582_69(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...   103   2e-20
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin...   103   2e-20
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   103   2e-20
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo...   102   3e-20
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl...   102   3e-20
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   102   3e-20
protein update 2009. 4.18
PSORT 

 psg: 0.76  gvh: 0.42  alm: 0.32  top: 0.37  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SHG107 is end
5' end seq. ID SHG107F
5' end seq. 
>SHG107F.Seq
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAAT
CATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAA
AACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTA
CAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAA
AGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCT
ATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATC
CCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAA
ACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAANNNNNNNNNN
Length of 5' end seq. 536
3' end seq. ID SHG107Z
3' end seq. 
>SHG107Z.Seq
NNNNNNNNNNTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCCTTGTA
AACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGTATCGTTGGT
GATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTCCATTG
ATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTATCAGT
TGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAATGGTT
ATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTTTTAAATGAA
CTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAGAGTGATAAT
CAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTACTTATAAAT
GATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTGATTTA
GCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAGCAACAAAATAATTAGAGAATTT
GTAAACAATGGTATTCAAAAAGGTATACCATATGCGATTATGCNATTTATCAATTTTTCC
AAAAAAACATAATTTCAAA
Length of 3' end seq. 679
Connected seq. ID SHG107P
Connected seq. 
>SHG107P.Seq
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAAT
CATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAA
AACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTA
CAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAA
AGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCT
ATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATC
CCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAA
ACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAA----------TGGA
TGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAA
TGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCTCGTGC
TTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGTGATCT
CACCAATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGTGATAT
CGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATTCTTCA
TCAAGCCTCTACCACTGAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAAACTAT
CTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAGAGTGATAATCAAATCGAAGAACT
CAATCAATACATCAATCCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCAGAACG
TTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCTATGGG
TGATAGTATTAGAAATCTTTTAAGCAACAAAATAATTAGAGAATTTGTAAACAATGGTAT
TCAAAAAGGTATACCATATGCGATTATGCNATTTATCAATTTTTCCAAAAAAACATAATT
TCAAA
Length of connected seq. 1195
Full length Seq ID -
Full length Seq. -
Length of full length seq. -