>SHF893 (SHF893Q) /CSM/SH/SHF8-D/SHF893Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTTCATAATTCCCAATTTGAATAAAGCAGTTCAAGAGGNTGAAGAAATTGAAAGACAACA
AAATGGTAATGGTTCACNTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGT
TGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACG
TATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTTTT
AGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTT
ACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAA
TGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACA
AATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACA
AAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGA
ATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCA
AGAGAAACAACAATNTCNTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACA
ACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACNATTATTAGAACA
AGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAA

iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---FIIPNLNKAVQEXEEIERQQNGNGSXAVNSHKIVTQMGNVENNEITNEQDAIEQAQH
LQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQL
NENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKA
QLELDAELAKNNKQENQDENLVQEKQQXXDQIKNQLKNIQHEQQIQEQQDKLNQEKNQXL
LEQEQNQK*fnhxfxf*

Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---FIIPNLNKAVQEXEEIERQQNGNGSXAVNSHKIVTQMGNVENNEITNEQDAIEQAQH
LQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQL
NENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKA
QLELDAELAKNNKQENQDENLVQEKQQXXDQIKNQLKNIQHEQQIQEQQDKLNQEKNQXL
LEQEQNQK*fnhxfxf*

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---s*fpi*ikqfkrxkklkdnkmvmvhxl*tlirl*lkwemlkimklpmnkmplnklni
ynvlkmvkismsmklpnmklxf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnl
mrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkkl
nlnwmlnwlkiinkrikmri*fkrnnnxxtklkin*kifnmnnksknnkin*ikkkinxy
*nknkiknnliixxlfk

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---hnsqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstf
tty*kw*ryr*v*scpt*scxfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt*
*e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*kss
t*igc*ig*k**tresr*efssrettxs*pn*ksikkyst*ttnprttr*iksrkkstii
rtrtkskii*sxlxflk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ885 (SHJ885Q) /CSM/SH/SHJ8-D/SHJ885Q.Seq.d/                        706   0.0
SHJ637 (SHJ637Q) /CSM/SH/SHJ6-B/SHJ637Q.Seq.d/                        706   0.0
SHG652 (SHG652Q) /CSM/SH/SHG6-C/SHG652Q.Seq.d/                        706   0.0
SHF893 (SHF893Q) /CSM/SH/SHF8-D/SHF893Q.Seq.d/                        706   0.0
SHF562 (SHF562Q) /CSM/SH/SHF5-C/SHF562Q.Seq.d/                        706   0.0
SHD214 (SHD214Q) /CSM/SH/SHD2-A/SHD214Q.Seq.d/                        706   0.0
SHD213 (SHD213Q) /CSM/SH/SHD2-A/SHD213Q.Seq.d/                        706   0.0
SHA293 (SHA293Q) /CSM/SH/SHA2-D/SHA293Q.Seq.d/                        706   0.0
CHS117 (CHS117Q) /CSM/CH/CHS1-A/CHS117Q.Seq.d/                        706   0.0
CHR604 (CHR604Q) /CSM/CH/CHR6-A/CHR604Q.Seq.d/                        706   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   686   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   5e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.005  7
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.017  4
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.021  12
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.021  2
CN575979|CN575979.1 rc62f02.x1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 3' similar to TR:O44186 O44186 F33D4.4 PROTEIN. [1] ;, mRNA sequence.    36   0.18   3
AC098999|AC098999.8 Rattus norvegicus clone CH230-186P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.19   2
AC134802|AC134802.2 Rattus norvegicus clone CH230-461P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.19   2
AC160242|AC160242.7 Medicago truncatula clone mth2-65g16, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.29   8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   264   3e-69
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.49
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.8
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    35   2.4
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.4
CR450845_2(CR450845|pid:none) Zebrafish DNA sequence from clone ...    35   2.4
AF063866_45(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    35   4.1
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.1
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           34   5.4
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    34   7.0

 psg: 0.69  gvh: 0.24  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHF893 is nuc

>SHF893F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N

>SHF893Z.Seq
NNNNNNNNNNTTCATAATTCCCAATTTGAATAAAGCAGTTCAAGAGGNTGAAGAAATTGA
AAGACAACAAAATGGTAATGGTTCACNTGCTGTAAACTCTCATAAGATTGTAACTCAAAT
GGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACA
TTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGT
TGCNTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATT
AGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACT
TAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGT
TGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACA
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATNTCNTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACNATT
ATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAA

>SHF893P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TTCATAATTCCCAATTTGAATAAAGCAGTTCAAGAGGNTGAAGAAATTGAAAGACAACA
AAATGGTAATGGTTCACNTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGT
TGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACG
TATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTTTT
AGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTT
ACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAA
TGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACA
AATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACA
AAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGA
ATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCA
AGAGAAACAACAATNTCNTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACA
ACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACNATTATTAGAACA
AGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAA