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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF874
Library SH
(Link to library)
Clone ID SHF874
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHF874P
(Link to Original site)
Representative DNA sequence 
>SHF874 (SHF874Q) /CSM/SH/SHF8-D/SHF874Q.Seq.d/
AAAAAAAAACAAAAAAGTTTTTGTGTAATGTAATAATTCATTTTTCTTTTTATATGAATG
TAAAATCGAAAAAATATAAATAGATAAATAATAAACAATAATAATAAAAAAAAAAXXXXX
XXXXXTCNTCTTTTATCCATANGATGAAGCACCGTTACCATCGAATCCATCATTATGTTC
ATTCCCAGCTTGGACTTTAATCATACCATGTCTTGGTTTACTACCATCAATGTTAATGTT
TATATTNTCACCAAGTGAAAGATTTAGGTCAGGTATTATCTCTGCGATTGGAGTTTCAAT
ACTTTTCTTTGGTATGGGATCAACCCTATTATTATTAAATTATTGTTTAGGTCCGAATCA
AGATAAATTCAATCCNTTAGCTTGGTTAATCACTTTATTTGGTTCTTTTATTATAGTTTT
TGGTTCAATTCGTAGTGATACCATTTTAATTTTAGATAAAAAAAAAGAGAATCCNAGATT
CATAGAAGAGGAAAGATTATTATCTTCATCAACTCNAATTAAAAATATAATTGAAGATTC
NATTGATTATAATGAAATTATAATTAATAATGGTAGTCNNAATTAT
sequence update 2009. 3.30
Translated Amino Acid sequence 
kkkqksfcvm**fiflfi*m*nrkninr*IINNNNKKK---

---XFYPXDEAPLPSNPSLCSFPAWTLIIPCLGLLPSMLMFIXSPSERFRSGIISAIGVS
ILFFGMGSTLLLLNYCLGPNQDKFNPLAWLITLFGSFIIVFGSIRSDTILILDKKKENPR
FIEEERLLSSSTXIKNIIEDSIDYNEIIINNGSXNY
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkqksfcvm**fiflfi*m*nrkninr*IINNNNKKK---

---ssfihxmkhryhrihhyvhsqlgl*syhvlvyyhqc*clyxhqvkdlgqvlslrlef
qyfslvwdqpyyy*iiv*vrikinsix*lg*slylvlll*flvqfvvipf*f*ikkkrix
ds*krkdyylhqlxlki*lkixliimkl*limvvxi

Frame B:
kknkkvfv*cnnsffflyeckieki*idk**tiiikkk---

---xllsix*stvtiesiimfipsldfnhtmswfttinvnvyixtk*ki*vryylcdwsf
ntflwyginpiiikllfrsesr*iqsxslvnhfiwffyysfwfns**yhfnfr*kkresx
ihrrgkiiifinsn*kyn*rfx*l**nyn**w*sxl

Frame C:
kktkkflcnviihfsfymnvkskkyk*innkq***kk---

---XFYPXDEAPLPSNPSLCSFPAWTLIIPCLGLLPSMLMFIXSPSERFRSGIISAIGVS
ILFFGMGSTLLLLNYCLGPNQDKFNPLAWLITLFGSFIIVFGSIRSDTILILDKKKENPR
FIEEERLLSSSTXIKNIIEDSIDYNEIIINNGSXNY
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF844 (SHF844Q) /CSM/modify/removed090331/SHF844Q.Seq.d/             807   0.0
SHF874 (SHF874Q) /CSM/SH/SHF8-D/SHF874Q.Seq.d/                        807   0.0
SSG766 (SSG766Q) /CSM/SS/SSG7-C/SSG766Q.Seq.d/                        186   3e-46
SHF874 (SHF874Q) /CSM/SH/SHF8-D/SHF874Q.Seq.d/                         88   2e-16
VSF190 (VSF190Q) /CSM/VS/VSF1-D/VSF190Q.Seq.d/                         38   0.15
VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                         38   0.15
VHL748 (VHL748Q) /CSM/VH/VHL7-B/VHL748Q.Seq.d/                         38   0.15
VHD679 (VHD679Q) /CSM/VH/VHD6-D/VHD679Q.Seq.d/                         38   0.15
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ406464) Dictyostelium discoideum cDNA clone:dds35h12, 3' ...   634   0.0    2
(C84845) Dictyostelium discoideum slug cDNA, clone SSG766.        186   6e-43  1
(AC134942) Homo sapiens chromosome 3 clone RP11-164H23, WORK...    44   0.047  2
(L37838) Schizosaccharomyces pombe fus1 gene, complete cds.        50   0.096  1
(CU329670) Schizosaccharomyces pombe chromosome I.                 50   0.096  1
(CT963093) M.truncatula DNA sequence from clone MTH2-20I20 o...    34   0.37   6
(AC134655) Rattus norvegicus clone CH230-12A24, *** SEQUENCI...    48   0.38   1
(AC126992) Rattus norvegicus clone CH230-298G4, *** SEQUENCI...    48   0.38   1
(DH679865) Rattus norvegicus DNA, BAC clone: RNB1-232M01, 3'...    48   0.38   1
(AM619127) Entamoeba invadens IP1 GSS, clone inv117e04.p1k.        32   0.80   3
dna update 2009. 4.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU469464_276(CU469464|pid:none) Candidatus Phytoplasma mali stra...    35   1.1
CT573071_2240(CT573071|pid:none) Kuenenia stuttgartiensis genome...    35   1.4
BA000043_659(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...    34   2.5
AP009537_12(AP009537|pid:none) Torquigener brevipennis mitochond...    33   4.2
(Q5B1X5) RecName: Full=U3 small nucleolar RNA-associated protein...    33   5.5
AP009529_12(AP009529|pid:none) Takifugu porphyreus mitochondrial...    33   7.1
BX908798_867(BX908798|pid:none) Parachlamydia-related symbiont U...    33   7.1
CP000647_2880(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    33   7.1
CP000964_1164(CP000964|pid:none) Klebsiella pneumoniae 342, comp...    33   7.1
AL833087_1(AL833087|pid:none) Homo sapiens mRNA; cDNA DKFZp451M1...    32   9.3
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for SHF874 is

5' end seq. ID SHF874F
5' end seq. 
>SHF874F.Seq
AAAAAAAAACAAAAAAGTTTTTGTGTAATGTAATAATTCATTTTTCTTTTTATATGAATG
TAAAATCGAAAAAATATAAATAGATAAATAATAAACAATAATAATAAAAAAAAAAXXXXX
XXXXX
Length of 5' end seq. 125
3' end seq. ID SHF874Z
3' end seq. 
>SHF874Z.Seq
XXXXXXXXXXTCNTCTTTTATCCATANGATGAAGCACCGTTACCATCGAATCCATCATTA
TGTTCATTCCCAGCTTGGACTTTAATCATACCATGTCTTGGTTTACTACCATCAATGTTA
ATGTTTATATTNTCACCAAGTGAAAGATTTAGGTCAGGTATTATCTCTGCGATTGGAGTT
TCAATACTTTTCTTTGGTATGGGATCAACCCTATTATTATTAAATTATTGTTTAGGTCCG
AATCAAGATAAATTCAATCCNTTAGCTTGGTTAATCACTTTATTTGGTTCTTTTATTATA
GTTTTTGGTTCAATTCGTAGTGATACCATTTTAATTTTAGATAAAAAAAAAGAGAATCCN
AGATTCATAGAAGAGGAAAGATTATTATCTTCATCAACTCNAATTAAAAATATAATTGAA
GATTCNATTGATTATAATGAAATTATAATTAATAATGGTAGTCNNAATTAT
Length of 3' end seq. 471
Connected seq. ID SHF874P
Connected seq. 
>SHF874P.Seq
AAAAAAAAACAAAAAAGTTTTTGTGTAATGTAATAATTCATTTTTCTTTTTATATGAATG
TAAAATCGAAAAAATATAAATAGATAAATAATAAACAATAATAATAAAAAAAAAA-----
-----TCNTCTTTTATCCATANGATGAAGCACCGTTACCATCGAATCCATCATTATGTTC
ATTCCCAGCTTGGACTTTAATCATACCATGTCTTGGTTTACTACCATCAATGTTAATGTT
TATATTNTCACCAAGTGAAAGATTTAGGTCAGGTATTATCTCTGCGATTGGAGTTTCAAT
ACTTTTCTTTGGTATGGGATCAACCCTATTATTATTAAATTATTGTTTAGGTCCGAATCA
AGATAAATTCAATCCNTTAGCTTGGTTAATCACTTTATTTGGTTCTTTTATTATAGTTTT
TGGTTCAATTCGTAGTGATACCATTTTAATTTTAGATAAAAAAAAAGAGAATCCNAGATT
CATAGAAGAGGAAAGATTATTATCTTCATCAACTCNAATTAAAAATATAATTGAAGATTC
NATTGATTATAATGAAATTATAATTAATAATGGTAGTCNNAATTAT
Length of connected seq. 576
Full length Seq ID -
Full length Seq. -
Length of full length seq. -