NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF845
Library SH
(Link to library)
Clone ID SHF845
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11241-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHF845 (SHF845Q) /CSM/SH/SHF8-B/SHF845Q.Seq.d/
XXXXXXXXXXCAACAGCAACAATACCAGCAGTATTGACATCAACAATAAAAACAAGTAGT
CCAGACAGAACAACNCCNCTTACATCATCACCNCCATTAGCATCAANTAAATCAACAGAT
GAAATAATGAAAAAATTGGNCCNATTTACACAAGAAACAACACCATCAATAAGAATAGCA
ACAACAACAACACCAACAACAATAACAACNCCAACAACAACAGCGACAACCNCAACAATA
ACAACAGACAAAACAACNCCAGTTACATCATCACCNCCAACAGCATTTAACATATCAAGT
GAAGATTTAATGAAAAAGTTGGNCCNATTTANTAATTTTTAGAAGATAATGTATATTTTA
TAGCTATAGAGANT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---TATIPAVLTSTIKTSSPDRTTPLTSSPPLASXKSTDEIMKKLXXFTQETTPSIRIAT
TTTPTTITTPTTTATTXTITTDKTTPVTSSPPTAFNISSEDLMKKLXXFXNF*kimyil*
l*r
Translated Amino Acid sequence (All Frames) 
Frame A:
---nsnntssidinnknk*srqnnxxyiitxisix*inr*nnekigpiytrnntinknsn
nnntnnnnnxnnnsdnxnnnnrqnnxsyiitxnsi*hik*rfnekvgpix*flednvyfi
aiex


Frame B:
---TATIPAVLTSTIKTSSPDRTTPLTSSPPLASXKSTDEIMKKLXXFTQETTPSIRIAT
TTTPTTITTPTTTATTXTITTDKTTPVTSSPPTAFNISSEDLMKKLXXFXNF*kimyil*
l*r


Frame C:
---qqqyqqy*hqq*kqvvqteqxxlhhhxh*hqxnqqmk**knwxxlhkkqhhq*e*qq
qqhqqq*qxqqqqrqpqq*qqtkqxqlhhhxqqhltyqvki**kswxxlxifrr*cifys
yrx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF845 (SHF845Q) /CSM/SH/SHF8-B/SHF845Q.Seq.d/                        297   6e-80
VHE433 (VHE433Q) /CSM/VH/VHE4-B/VHE433Q.Seq.d/                        281   4e-75
SHB194 (SHB194Q) /CSM/SH/SHB1-D/SHB194Q.Seq.d/                        281   4e-75
CHK709 (CHK709Q) /CSM/CH/CHK7-A/CHK709Q.Seq.d/                        281   4e-75
AHN116 (AHN116Q) /CSM/AH/AHN1-A/AHN116Q.Seq.d/                        281   4e-75
AHJ420 (AHJ420Q) /CSM/AH/AHJ4-A/AHJ420Q.Seq.d/                        281   4e-75
AHC605 (AHC605Q) /CSM/AH/AHC6-A/AHC605Q.Seq.d/                        281   4e-75
AHA705 (AHA705Q) /CSM/AH/AHA7-A/AHA705Q.Seq.d/                        281   4e-75
AHA575 (AHA575Q) /CSM/AH/AHA5-D/AHA575Q.Seq.d/                        281   4e-75
AHL755 (AHL755Q) /CSM/AH/AHL7-C/AHL755Q.Seq.d/                        276   2e-73
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DY614703|DY614703.1 IMMUNEF045805H24 POSSUM_01-C-POSSUM-IMMUNE-2KB Trichosurus vulpecula cDNA clone 1061021070862, mRNA sequence.    40   0.68   2
DY596878|DY596878.1 KIDNEYF074988H10 POSSUM_01-POSSUM-KIDNEY-2KB Trichosurus vulpecula cDNA clone 1061019911936, mRNA sequence.    40   0.76   2
DY593007|DY593007.1 GUTF031289C19 POSSUM_01-POSSUM-GUT-2KB Trichosurus vulpecula cDNA clone 1061019985937, mRNA sequence.    38   1.9    2
Z74105|Z74105.1 S.cerevisiae chromosome IV reading frame ORF YDL057w.    44   2.2    1
Z74104|Z74104.1 S.cerevisiae chromosome IV reading frame ORF YDL056w.    44   2.2    1
X74158|X74158.1 S.cerevisiae MBP1 gene.                            44   2.2    1
AY553999|AY553999.1 Saccharomyces cerevisiae strain S288C transcription factor MBP1 (MBP1) gene, partial cds.    44   2.2    1
AY553998|AY553998.1 Saccharomyces cerevisiae strain YPS163 transcription factor MBP1 (MBP1) gene, partial cds.    44   2.2    1
AY553997|AY553997.1 Saccharomyces cerevisiae strain M34 transcription factor MBP1 (MBP1) gene, partial cds.    44   2.2    1
AY553996|AY553996.1 Saccharomyces cerevisiae strain M32 transcription factor MBP1 (MBP1) gene, partial cds.    44   2.2    1
dna update 2006. 3.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB034969_3(AB034969|pid:none) Thermococcus sp. B1001 cgtB, cgtA,...    33   3.9
AL939121_125(AL939121|pid:none) Streptomyces coelicolor A3(2) co...    32   5.0
protein update 2009. 1.16
PSORT 

 psg: 0.90  gvh: 0.51  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHF845 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHF845Z
3' end seq. 
>SHF845Z.Seq
NNNNNNNNNNCAACAGCAACAATACCAGCAGTATTGACATCAACAATAAAAACAAGTAGT
CCAGACAGAACAACNCCNCTTACATCATCACCNCCATTAGCATCAANTAAATCAACAGAT
GAAATAATGAAAAAATTGGNCCNATTTACACAAGAAACAACACCATCAATAAGAATAGCA
ACAACAACAACACCAACAACAATAACAACNCCAACAACAACAGCGACAACCNCAACAATA
ACAACAGACAAAACAACNCCAGTTACATCATCACCNCCAACAGCATTTAACATATCAAGT
GAAGATTTAATGAAAAAGTTGGNCCNATTTANTAATTTTTAGAAGATAATGTATATTTTA
TAGCTATAGAGANT
Length of 3' end seq. 374
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -