SHF819
Library SH
(Link to library)
Clone ID SHF819
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHF819P
(Link to Original site)
Representative DNA sequence
>SHF819 (SHF819Q) /CSM/SH/SHF8-A/SHF819Q.Seq.d/
ATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAA
AACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTT
TTTTAAATTAATTTCCAGCCTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCAT
TACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTA
TTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXX
XXXXXXXGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTT
GGTGNTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACTTCAACATT
GTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATG
TCAATCACCACCTCAACCCAAACTTCAATNTCTCAATCATCAACCAAGACTGTCAACGGT
AAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCA
ATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACNTCAATGTCGTTGCNTCAGAA
GCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTT
AAAGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAACAA
GCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCNTATAAAGTT
TGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGAT
TCAACTCNTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTT
TATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAAT
TTTAAAACAATAAAAATTTACAT
sequence update 2002.10.25
Translated Amino Acid sequence
fnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklisslsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---SIESKVIDFTHGTIQGVGXLKCGTCNFANKIAANFNIVGNVKMAATATVYANIDALM
SITTSTQTSXSQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNXNVVASE
ANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAYKV
WSIVNSPCNCECGLKRL*idstxplq*q*ikiiqliliflysnqcicqlty*lfkhtlfn
fktikiy


Translated Amino Acid sequence (All Frames)
Frame A:
iqsnkqktti*knnnl**sknn*ritncffllltinsniff*infqpfcfftqsqptlyh
yyqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---vqlnqkllislmvpfkvlvxlnvvlvtlpirslltstllvtlkwpqlqlsmqtlml*
cqsppqpklqxlnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslxq
kpiklklplvlysnssqpqllkvmspqlavsxqalllllnklpvlllllpkkllwllxik
fgql*ihhvtvnvd*rdykliqlxlsndnklk*ynsflfffiltnvfvn*linflntpfs
ilkq*kft

Frame B:
fnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklisslsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---fn*iksy*fhswyhsrcwxs*mwyl*lcq*drc*lqhcw*r*ngrncnclckh*cfn
vnhhlnpnfnxsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*xqcrcxr
sqss*nclwyciqihlspsc*r*clls*lshxkhccccstscrccccccpkscygccx*s
lvnckftm*l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpfq
f*nnknlh

Frame C:
sikqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytittnpisl
lptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---SIESKVIDFTHGTIQGVGXLKCGTCNFANKIAANFNIVGNVKMAATATVYANIDALM
SITTSTQTSXSQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNXNVVASE
ANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAYKV
WSIVNSPCNCECGLKRL*idstxplq*q*ikiiqliliflysnqcicqlty*lfkhtlfn
fktikiy

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHF819 (SHF819Q) /CSM/SH/SHF8-A/SHF819Q.Seq.d/ 866 0.0
SHF649 (SHF649Q) /CSM/SH/SHF6-C/SHF649Q.Seq.d/ 852 0.0
SHF295 (SHF295Q) /CSM/SH/SHF2-D/SHF295Q.Seq.d/ 852 0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 850 0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 850 0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 850 0.0
SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/ 850 0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 850 0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/ 850 0.0
SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/ 850 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 850 0.0 2
AX251781|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.080 4
AX344185|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.080 4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.080 4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.080 4
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.10 1
AL845362|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20. 38 0.32 3
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 48 0.40 1
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE. 48 0.40 1
AC156169|AC156169.2 Bos taurus clone CH240-50N13, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces. 48 0.40 1
dna update 2006. 3.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 242 2e-62
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR... 34 9.1

protein update 2008.11.17
PSORT

psg: 0.59 gvh: 0.38 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHF819 is cyt

5' end seq. ID SHF819F
5' end seq.
>SHF819F.Seq
ATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAA
AACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTT
TTTTAAATTAATTTCCAGCCTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCAT
TACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTA
TTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 307
3' end seq. ID SHF819Z
3' end seq.
>SHF819Z.Seq
NNNNNNNNNNGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGT
GTTGGTGNTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACTTCAAC
ATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTA
ATGTCAATCACCACCTCAACCCAAACTTCAATNTCTCAATCATCAACCAAGACTGTCAAC
GGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTT
CCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACNTCAATGTCGTTGCNTCA
GAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTT
GTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAA
CAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCNTATAAA
GTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATT
GATTCAACTCNTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTT
CTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTC
AATTTTAAAACAATAAAAATTTACAT
Length of 3' end seq. 746
Connected seq. ID SHF819P
Connected seq.
>SHF819P.Seq
ATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAA
AACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTT
TTTTAAATTAATTTCCAGCCTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCAT
TACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTA
TTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA---
-------GTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTT
GGTGNTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACTTCAACATT
GTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATG
TCAATCACCACCTCAACCCAAACTTCAATNTCTCAATCATCAACCAAGACTGTCAACGGT
AAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCA
ATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACNTCAATGTCGTTGCNTCAGAA
GCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTT
AAAGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAACAA
GCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCNTATAAAGTT
TGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGAT
TCAACTCNTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTT
TATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAAT
TTTAAAACAATAAAAATTTACAT
Length of connected seq. 1033
Full length Seq ID -
Full length Seq. -
Length of full length seq. -