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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF779
Library SH
(Link to library)
Clone ID SHF779
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16021-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHF779 (SHF779Q) /CSM/SH/SHF7-D/SHF779Q.Seq.d/
XXXXXXXXXXAGAAATCAACAACTACAAGAAAACCATTTTCTCTTCAAGGTGTTATTACT
CATTCCAGTTCAAGAACAATAATCAAAGCACCAGAAAGATTAGCAGATCAACCACCAGTT
GCTTCCAAAGTTGTTCGTAAGAAATCAACCACAACAGTTAAGCCAACCACTGCAATCAAA
AAGAAAGTTGAAAAGAAGAAAGTTGTTGCATTAAAGAAAACTGCTTCAGCTTCTTCATCT
GGTAAAAAAGTTGTCGCCTCAAAAAAGAAAGTAGNNGNCAANAAATAAAAAAAAGGGAAA
AATCA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---KSTTTRKPFSLQGVITHSSSRTIIKAPERLADQPPVASKVVRKKSTTTVKPTTAIKK
KVEKKKVVALKKTASASSSGKKVVASKKKVXXXK*kkgkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---einnykktifssrcyysfqfknnnqstrkisrsttscfqscs*einhns*anhcnqk
es*keesccikencfsffiw*kscrlkkesxxqxikkreks


Frame B:
---KSTTTRKPFSLQGVITHSSSRTIIKAPERLADQPPVASKVVRKKSTTTVKPTTAIKK
KVEKKKVVALKKTASASSSGKKVVASKKKVXXXK*kkgkn


Frame C:
---nqqlqenhflfkvlllipvqeq*skhqkd*qinhqllpklfvrnqpqqlsqplqskr
klkrrkllh*rkllqllhlvkklspqkrk*xxxnkkkgki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI620 (SSI620Q) /CSM/SS/SSI6-A/SSI620Q.Seq.d/                        494   e-139
SSI349 (SSI349Q) /CSM/SS/SSI3-C/SSI349Q.Seq.d/                        494   e-139
SSI348 (SSI348Q) /CSM/SS/SSI3-B/SSI348Q.Seq.d/                        494   e-139
SSG674 (SSG674Q) /CSM/SS/SSG6-D/SSG674Q.Seq.d/                        494   e-139
SSD390 (SSD390Q) /CSM/SS/SSD3-D/SSD390Q.Seq.d/                        494   e-139
SSB111 (SSB111Q) /CSM/SS/SSB1-A/SSB111Q.Seq.d/                        494   e-139
SHF779 (SHF779Q) /CSM/SH/SHF7-D/SHF779Q.Seq.d/                        494   e-139
FC-BS08 (FC-BS08Q) /CSM/FC/FC-BS/FC-BS08Q.Seq.d/                      494   e-139
SSK129 (SSK129Q) /CSM/SS/SSK1-B/SSK129Q.Seq.d/                        454   e-127
SSG366 (SSG366Q) /CSM/SS/SSG3-C/SSG366Q.Seq.d/                        313   8e-85
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   196   e-117  3
AC016036|AC016036.3 Homo sapiens clone RP11-23K12, LOW-PASS SEQUENCE SAMPLING.    46   0.44   1
AC087066|AC087066.3 Rattus norvegicus clone RP31-194D8 strain Brown Norway, complete sequence.    46   0.44   1
AC095247|AC095247.5 Rattus norvegicus 4 BAC CH230-10C6 (Children's Hospital Oakland Research Institute) complete sequence.    46   0.44   1
AC121216|AC121216.4 Rattus norvegicus 4 CH230-220A21 (Children's Hospital Oakland Research Institute) complete sequence.    46   0.44   1
AC092126|AC092126.3 Homo sapiens chromosome 16 clone RP11-1114G22, complete sequence.    46   0.44   1
AC018846|AC018846.5 Homo sapiens chromosome 16 clone RP11-370P15, complete sequence.    46   0.44   1
BY495904|BY495904.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830043F22, 3' end partial sequence.    44   1.7    1
DA045322|DA045322.1 Homo sapiens cDNA clone BLADE2007795, 5' end, mRNA sequence.    44   1.7    1
AC173135|AC173135.2 Bos taurus clone CH240-528K15, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces.    44   1.7    1
dna update 2006. 3.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HQ8) RecName: Full=Uncharacterized protein DDB_G0274469;  &A...    72   5e-12
protein update 2009. 1.16
PSORT 

 psg: 0.87  gvh: 0.45  alm: 0.54  top: 0.43  tms: 0.00  mit: 0.50  mip: 0.05
 nuc: 0.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 40.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SHF779 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHF779Z
3' end seq. 
>SHF779Z.Seq
NNNNNNNNNNAGAAATCAACAACTACAAGAAAACCATTTTCTCTTCAAGGTGTTATTACT
CATTCCAGTTCAAGAACAATAATCAAAGCACCAGAAAGATTAGCAGATCAACCACCAGTT
GCTTCCAAAGTTGTTCGTAAGAAATCAACCACAACAGTTAAGCCAACCACTGCAATCAAA
AAGAAAGTTGAAAAGAAGAAAGTTGTTGCATTAAAGAAAACTGCTTCAGCTTCTTCATCT
GGTAAAAAAGTTGTCGCCTCAAAAAAGAAAGTAGNNGNCAANAAATAAAAAAAAGGGAAA
AATCA
Length of 3' end seq. 305
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -