SHF745
Library SH
(Link to library)
Clone ID SHF745
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHF745P
(Link to Original site)
Representative DNA sequence
>SHF745 (SHF745Q) /CSM/SH/SHF7-B/SHF745Q.Seq.d/
ATTTATTTTTTTTTTAAAATTATTTATATGTATATTTTTTTTTGTTTATTAAAAAATTTT
AATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTA
ATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTAT
TAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATT
TAAATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAA
TTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTG
CTGATGGTNCATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTA
CCAATCCAAAANATTATTACTTTGAAACCTATGAAAANACATTGGCTTGTCCACCAGGNG
TACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAXXXXXXXXXXTGANTT
TTTTTTTCCCCAAAATCGTGTTGGTANAGTTTGGCTTGANANAAATGGTAATGGTANTCA
ANATGCTGGTGAACCTGGTATTTCAGGAATCCCAGTATTTTTAATNTATGGTCAACAATC
AACTCCAACAAGTCAAACTGNATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGANTT
CAGTTCNAATTANTANTGNGTAANTCCTGNTGCANTTTTCCNAGNTGGTTTTTCCNT
sequence update 2002.10.25
Translated Amino Acid sequence
lfff*nylyvyfflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVL
NISSQVYDQRILALKGKCYLNSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSA
DGXFIYDGLTQRTTYEFTFTNPKXYYFETYEXTLACPPGVPCIRPTVSADNLAA---

---XFFFPQNRVGXVWLXXNGNGXQXAGEPGISGIPVFLXYGQQSTPTSQTXSDSNGYFK
FEVXFSSNXXXVXPXAXFXXGFS


Translated Amino Acid sequence (All Frames)
Frame A:
iyfffkiiymyiffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily
*ifhhkyminvfwh*kenvi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihl
lmvhlymmd*lnvqlmnlhlpiqxiitlkpmkxhwlvhqxyhvfvqrfqliiwq---

---*xffspkscwxsla*xkw*wxsxcw*twyfrnpsifnxwstinsnksnxirfkwlfq
i*s*xqfxlxxxxsxcxfpxwffx

Frame B:
fifflklficifffvy*kiliivynifkyiy*yiliy*y**neniifiiinikynfkyci
kyfitsi*styfgikrkmlfkfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic
*wxiyi*winstynl*iyiyqskxlll*nl*kxiglstrxtmyssngfs**fgs---

---XFFFPQNRVGXVWLXXNGNGXQXAGEPGISGIPVFLXYGQQSTPTSQTXSDSNGYFK
FEVXFSSNXXXVXPXAXFXXGFS

Frame C:
lfff*nylyvyfflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVL
NISSQVYDQRILALKGKCYLNSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSA
DGXFIYDGLTQRTTYEFTFTNPKXYYFETYEXTLACPPGVPCIRPTVSADNLAA---

---xfffpkivlvxfglxxmvmvxxmlvnlvfqesqyf*xmvnnqlqqvklxpiqmvisn
lklxsvxixxx*xlxxfsxxvfp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK766 (SHK766Q) /CSM/SH/SHK7-C/SHK766Q.Seq.d/ 684 0.0
SHF745 (SHF745Q) /CSM/SH/SHF7-B/SHF745Q.Seq.d/ 684 0.0
SHD532 (SHD532Q) /CSM/SH/SHD5-B/SHD532Q.Seq.d/ 684 0.0
SHL516 (SHL516Q) /CSM/SH/SHL5-A/SHL516Q.Seq.d/ 678 0.0
SHL138 (SHL138Q) /CSM/SH/SHL1-B/SHL138Q.Seq.d/ 678 0.0
SHJ876 (SHJ876Q) /CSM/SH/SHJ8-D/SHJ876Q.Seq.d/ 678 0.0
SHI450 (SHI450Q) /CSM/SH/SHI4-C/SHI450Q.Seq.d/ 678 0.0
SHI363 (SHI363Q) /CSM/SH/SHI3-C/SHI363Q.Seq.d/ 678 0.0
SHG561 (SHG561Q) /CSM/SH/SHG5-C/SHG561Q.Seq.d/ 678 0.0
SHG226 (SHG226Q) /CSM/SH/SHG2-B/SHG226Q.Seq.d/ 678 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC090899|AC090899.3 Mus musculus clone RP23-25N5, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces. 38 0.69 2
DU889256|DU889256.1 387271 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0206N21 3, genomic survey sequence. 46 1.2 1
AC005213|AC005213.1 Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence. 46 1.2 1
AC005188|AC005188.1 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence. 46 1.2 1
AC162924|AC162924.5 Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence. 38 2.1 2
AW871630|AW871630.1 ra80c01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence. 44 4.7 1
AW871214|AW871214.1 ra56d01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence. 44 4.7 1
AW829376|AW829376.1 ra39d01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence. 44 4.7 1
BI742812|BI742812.1 kx35c12.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence. 44 4.7 1
AV984767|AV984767.1 Ciona intestinalis cDNA, clone:cilv38i14, 5' end, single read. 44 4.7 1
dna update 2006. 3.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,... 47 8e-04
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 39 0.007
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 43 0.012
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 41 0.046
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 40 0.079
CP000830_3576(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 36 1.5
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 35 3.3
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 34 4.3
AM263198_431(AM263198|pid:none) Listeria welshimeri serovar 6b s... 33 7.4
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 33 7.4
protein update 2009. 4.18
PSORT

psg: 0.95 gvh: 0.59 alm: 0.26 top: 0.47 tms: 0.07 mit: 0.31 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.56 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: Golgi
12.0 %: mitochondrial
12.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for SHF745 is end

5' end seq. ID SHF745F
5' end seq.
>SHF745F.Seq
ATTTATTTTTTTTTTAAAATTATTTATATGTATATTTTTTTTTGTTTATTAAAAAATTTT
AATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTA
ATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTAT
TAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATT
TAAATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAA
TTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTG
CTGATGGTNCATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTA
CCAATCCAAAANATTATTACTTTGAAACCTATGAAAANACATTGGCTTGTCCACCAGGNG
TACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCANNNNNNNNNN
Length of 5' end seq. 534
3' end seq. ID SHF745Z
3' end seq.
>SHF745Z.Seq
NNNNNNNNNNTGANTTTTTTTTTCCCCAAAATCGTGTTGGTANAGTTTGGCTTGANANAA
ATGGTAATGGTANTCAANATGCTGGTGAACCTGGTATTTCAGGAATCCCAGTATTTTTAA
TNTATGGTCAACAATCAACTCCAACAAGTCAAACTGNATCCGATTCAAATGGTTATTTCA
AATTTGAAGTTGANTTCAGTTCNAATTANTANTGNGTAANTCCTGNTGCANTTTTCCNAG
NTGGTTTTTCCNT
Length of 3' end seq. 253
Connected seq. ID SHF745P
Connected seq.
>SHF745P.Seq
ATTTATTTTTTTTTTAAAATTATTTATATGTATATTTTTTTTTGTTTATTAAAAAATTTT
AATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTA
ATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTAT
TAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATT
TAAATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAA
TTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTG
CTGATGGTNCATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTA
CCAATCCAAAANATTATTACTTTGAAACCTATGAAAANACATTGGCTTGTCCACCAGGNG
TACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCA----------TGANTT
TTTTTTTCCCCAAAATCGTGTTGGTANAGTTTGGCTTGANANAAATGGTAATGGTANTCA
ANATGCTGGTGAACCTGGTATTTCAGGAATCCCAGTATTTTTAATNTATGGTCAACAATC
AACTCCAACAAGTCAAACTGNATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGANTT
CAGTTCNAATTANTANTGNGTAANTCCTGNTGCANTTTTCCNAGNTGGTTTTTCCNT
Length of connected seq. 767
Full length Seq ID -
Full length Seq. -
Length of full length seq. -