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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF724
Library SH
(Link to library)
Clone ID SHF724
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11117-1
Original site URL
Representative seq. ID SHF724P
(Link to Original site)
Representative DNA sequence 
>SHF724 (SHF724Q) /CSM/SH/SHF7-A/SHF724Q.Seq.d/
TATTATTTTTATTTATATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAAC
TTTATATTATTTTATGAAAATATTGAAAAAAAACAATAATAATTATAATTATTTATAATT
AAATCTATATATATTTATTGATAAAAAAAAAACCANTAAAAAAAAAAAANNAAAANTAAA
ANTAANTTANCAAANCAAATNCTAANATTTTNATTTTNATTTTNATTTTNATTTNATTTT
AAAAAAAAAAXXXXXXXXXXTTATTTCGAATCNCANCNTTGGATTTCAGATTTAACAATG
GATGGTGAAGATATGATAATTTCNATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTT
GGTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTGAGAATAGT
GGAATTTGTGGAGGTGTTCNTGGTGCTCATCTATTACCTTCTGGTTATTTCGGTACACCT
GACGGTATCAATAGTGGTGAATATTACAATGA
sequence update 2002.10.25
Translated Amino Acid sequence 
yyfylyfsiln*ss**fntnfilfyeniekkq**l*lfiiksiyiy**kknx*KKKXKXK
XXLXXQXLXFXFXFXFXFXFKKK---

---YFESXXWISDLTMDGEDMIISIRDRGGDLDRDVGTYDMLRACFDGDQLILENSGICG
GVXGAHLLPSGYFGTPDGINSGEYYN
Translated Amino Acid sequence (All Frames) 
Frame A:
yyfylyfsiln*ss**fntnfilfyeniekkq**l*lfiiksiyiy**kknx*KKKXKXK
XXLXXQXLXFXFXFXFXFXFKKK---

---lfrixxldfrfnngw*rydnfxs*sww*frs*cwyl*yvksll*w*sint*e*wnlw
rcswcssitfwlfryt*ryq*w*ilq*

Frame B:
iifiyifqy*inhpnnsiptlyyfmkilkknnnnynyl*lnlyifidkkktxkkkkxkxk
xxxqxkx*xfxfxfxfxxilkkk---

---YFESXXWISDLTMDGEDMIISIRDRGGDLDRDVGTYDMLRACFDGDQLILENSGICG
GVXGAHLLPSGYFGTPDGINSGEYYN

Frame C:
lflfiffntkliiliiqyqlyiil*ky*kktiiiiiiyn*iyiyllikkkpxkkkxxx*x
*xxkxnxxixixixixixf*kk---

---isnxxxgfqi*qwmvki**fxfvivvvi*ivmlvpmic*elalmvin*ylrivefve
vfxvliyyllvisvhltvsivvnitm
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK877 (SHK877Q) /CSM/SH/SHK8-D/SHK877Q.Seq.d/                        470   e-131
SHK578 (SHK578Q) /CSM/SH/SHK5-D/SHK578Q.Seq.d/                        470   e-131
SHG224 (SHG224Q) /CSM/SH/SHG2-A/SHG224Q.Seq.d/                        470   e-131
SHF724 (SHF724Q) /CSM/SH/SHF7-A/SHF724Q.Seq.d/                        470   e-131
SHD711 (SHD711Q) /CSM/SH/SHD7-A/SHD711Q.Seq.d/                        470   e-131
SHA843 (SHA843Q) /CSM/SH/SHA8-B/SHA843Q.Seq.d/                        470   e-131
CHM555 (CHM555Q) /CSM/CH/CHM5-C/CHM555Q.Seq.d/                        470   e-131
AHO144 (AHO144Q) /CSM/AH/AHO1-B/AHO144Q.Seq.d/                        470   e-131
AHL377 (AHL377Q) /CSM/AH/AHL3-D/AHL377Q.Seq.d/                        470   e-131
AHL320 (AHL320Q) /CSM/AH/AHL3-A/AHL320Q.Seq.d/                        470   e-131
own update 2003. 6. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX571668|BX571668.20 Zebrafish DNA sequence from clone DKEY-47M8 in linkage group 10.    36   0.002  2
CT025903|CT025903.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-66H5.    42   0.002  2
BX324198|BX324198.20 Zebrafish DNA sequence from clone CH211-108M2 in linkage group 7.    36   0.007  4
AC092129|AC092129.3 Homo sapiens chromosome 16 clone RP11-140O8, complete sequence.    42   0.008  2
AC092125|AC092125.2 Homo sapiens chromosome 16 clone RP11-109D24, complete sequence.    42   0.008  2
BX950864|BX950864.17 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-158B13.    52   0.012  1
CC273850|CC273850.1 CH261-121B22_Sp6.1 CH261 Gallus gallus genomic clone CH261-121B22, DNA sequence.    40   0.038  2
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence.    34   0.045  4
BZ398899|BZ398899.1 EINBK79TF EI_10_12_KB Entamoeba invadens genomic clone EINBK79, DNA sequence.    50   0.049  1
CZ515488|CZ515488.1 GMW2-80H11a.g1 GMW2 Glycine max genomic, genomic survey sequence.    50   0.049  1
dna update 2006. 3.20
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 423,231,108
protein update 2009. 4.18
PSORT 

 psg: 0.91  gvh: 0.59  alm: 0.46  top: 0.20  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHF724 is exc
5' end seq. ID SHF724F
5' end seq. 
>SHF724F.Seq
TATTATTTTTATTTATATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAAC
TTTATATTATTTTATGAAAATATTGAAAAAAAACAATAATAATTATAATTATTTATAATT
AAATCTATATATATTTATTGATAAAAAAAAAACCANTAAAAAAAAAAAANNAAAANTAAA
ANTAANTTANCAAANCAAATNCTAANATTTTNATTTTNATTTTNATTTTNATTTNATTTT
AAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 260
3' end seq. ID SHF724Z
3' end seq. 
>SHF724Z.Seq
NNNNNNNNNNTTATTTCGAATCNCANCNTTGGATTTCAGATTTAACAATGGATGGTGAAG
ATATGATAATTTCNATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTTGGTACCTATG
ATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTGAGAATAGTGGAATTTGTG
GAGGTGTTCNTGGTGCTCATCTATTACCTTCTGGTTATTTCGGTACACCTGACGGTATCA
ATAGTGGTGAATATTACAATGA
Length of 3' end seq. 262
Connected seq. ID SHF724P
Connected seq. 
>SHF724P.Seq
TATTATTTTTATTTATATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAAC
TTTATATTATTTTATGAAAATATTGAAAAAAAACAATAATAATTATAATTATTTATAATT
AAATCTATATATATTTATTGATAAAAAAAAAACCANTAAAAAAAAAAAANNAAAANTAAA
ANTAANTTANCAAANCAAATNCTAANATTTTNATTTTNATTTTNATTTTNATTTNATTTT
AAAAAAAAAA----------TTATTTCGAATCNCANCNTTGGATTTCAGATTTAACAATG
GATGGTGAAGATATGATAATTTCNATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTT
GGTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTGAGAATAGT
GGAATTTGTGGAGGTGTTCNTGGTGCTCATCTATTACCTTCTGGTTATTTCGGTACACCT
GACGGTATCAATAGTGGTGAATATTACAATGA
Length of connected seq. 502
Full length Seq ID -
Full length Seq. -
Length of full length seq. -