SHF717
Library SH
(Link to library)
Clone ID SHF717
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11096-1|Contig-U12663-1
Original site URL
Representative seq. ID SHF717P
(Link to Original site)
Representative DNA sequence
>SHF717 (SHF717Q) /CSM/SH/SHF7-A/SHF717Q.Seq.d/
AAATTTTTTATTTTTTTTTTTAAATTATCATTACATGTTCNATTGTAAAATATTTCACAN
ATTTTTTTTATTTTAAAATAAATTTCCGCAATTCCAACAAATAAAAAGAAATTATAGAGA
TAAAATTTAATATAATATAATATAAAAAAAAAAXXXXXXXXXXCAATTTGAAAGTTCAAG
ATCGTCAAAACAGAGTTTGTACAACCGTTGCCANTGCCATTGTTGCGGAAACTTGTGCAC
CTTATACCGTTTTACCAGGTCTAATCAATGAATATCGTATTCCAGAGTTGAATGTTCAAA
ATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATATANNGGCGAAATGGGTAAAGACT
ATATTTACGCCGTAACCTACCNTACTCGAAGATGCACTCATGGATAGAGATGCTGTACAT
CGTCAAACCGCTTGATCTGCAATTNAACATATTTCATTGGGTGTAATGGGTTTAGGTTGT
GAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCNAATGTTTTNGAAACTTNTCCA
CATGTTAT
sequence update 2002.10.25
Translated Amino Acid sequence
kffifffklslhvxl*nisxiffilk*isaiptnkkkl*r*nli*YNIKKK---

---NLKVQDRQNRVCTTVAXAIVAETCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFE
YXGEMGKDYIYAVTYXTRRCTHG*rcctssnrlicnxtyfigcngfrl*rfthsftqlrl
axcfxnxstcy


Translated Amino Acid sequence (All Frames)
Frame A:
kffifffklslhvxl*nisxiffilk*isaiptnkkkl*r*nli*YNIKKK---

---qfessrsskqslynrcxchccgnlctlyrftrsnq*isysrvecskwcfeififpl*
ixxrng*rlylrrnlpyskmhswiemlyivkpldlqxnifhwv*wv*vvkihsliysitf
gxmfxklxhml

Frame B:
nflffflnyhymfxckifhxfflf*nkfpqfqqikrnyrdki*ynii*kk---

---NLKVQDRQNRVCTTVAXAIVAETCAPYTVLPGLINEYRIPELNVQNGVLKSLSFLFE
YXGEMGKDYIYAVTYXTRRCTHG*rcctssnrlicnxtyfigcngfrl*rfthsftqlrl
axcfxnxstcy

Frame C:
ifyfff*iiitcsivkyftxffyfkinfrnsnk*keiieikfnii*ykkk---

---i*kfkivktefvqplpxpllrklvhlipfyqv*smnivfqs*mfkmvf*nlylssln
ixakwvktiftp*ptxledalmdrdavhrqta*saixhislgvmglgcedslthllnyvw
pnvxetxphv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHF717 (SHF717Q) /CSM/SH/SHF7-A/SHF717Q.Seq.d/ 716 0.0
VHP552 (VHP552Q) /CSM/VH/VHP5-C/VHP552Q.Seq.d/ 692 0.0
VHI127 (VHI127Q) /CSM/VH/VHI1-B/VHI127Q.Seq.d/ 692 0.0
VHB738 (VHB738Q) /CSM/VH/VHB7-B/VHB738Q.Seq.d/ 692 0.0
VHA852 (VHA852Q) /CSM/VH/VHA8-C/VHA852Q.Seq.d/ 692 0.0
SHG642 (SHG642Q) /CSM/SH/SHG6-B/SHG642Q.Seq.d/ 692 0.0
SHE486 (SHE486Q) /CSM/SH/SHE4-D/SHE486Q.Seq.d/ 692 0.0
SHB332 (SHB332Q) /CSM/SH/SHB3-B/SHB332Q.Seq.d/ 692 0.0
SHA183 (SHA183Q) /CSM/SH/SHA1-D/SHA183Q.Seq.d/ 692 0.0
CHO828 (CHO828Q) /CSM/CH/CHO8-B/CHO828Q.Seq.d/ 692 0.0

own update 2003. 6. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence. 404 0.0 4
AU312337|AU312337.1 Elaphe quadrivirgata cDNA, clone:Eq_aB_021_F03. 98 5e-24 2
DY611266|DY611266.1 IMMUNEF045822K24 POSSUM_01-C-POSSUM-IMMUNE-2KB Trichosurus vulpecula cDNA clone 1061021063254, mRNA sequence. 80 2e-16 3
DV664609|DV664609.1 CGN-1811 Pericarp Coffea canephora cDNA clone cccp22c1 5', mRNA sequence. 82 2e-15 2
CX303109|CX303109.1 C08027F07SK PhyRootSw1 Citrus sinensis cDNA clone C08027F07, mRNA sequence. 58 4e-13 2
DY031641|DY031641.1 zfi02-5ms1-e05 Zfi02 Zamia fischeri cDNA clone zfi02-5ms1-e05 5', mRNA sequence. 68 7e-13 2
CV564919|CV564919.1 taj91h01.x1 Hydra EST UCI 6 Hydra magnipapillata cDNA 3' similar to TR:Q9VPR5 Q9VPR5 CG2807 PROTEIN. ;, mRNA sequence. 50 2e-12 3
DR450365|DR450365.1 WS00952.BR_K08 IS-B-N-A-10 Picea engelmannii x Picea sitchensis cDNA clone WS00952_K08 5, mRNA sequence. 44 2e-12 3
BM744919|BM744919.1 K-EST0018674 S4SNU1 Homo sapiens cDNA clone S4SNU1-13-D03 5', mRNA sequence. 60 1e-11 3
BJ615493|BJ615493.1 Xenopus laevis cDNA clone:XL172e10, 5' end. 56 2e-11 3
dna update 2006. 3.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008208_305(AP008208|pid:none) Oryza sativa (japonica cultivar-... 132 8e-52
(O57683) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu... 132 2e-51
(O75533) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu... 132 2e-51
AK048521_1(AK048521|pid:none) Mus musculus 16 days embryo head c... 132 2e-51
AK221391_1(AK221391|pid:none) Arabidopsis thaliana mRNA for nucl... 132 3e-51
AE014134_132(AE014134|pid:none) Drosophila melanogaster chromoso... 128 8e-51
CP000583_21(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ... 129 3e-48
AP007159_186(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 122 3e-46
AM270010_46(AM270010|pid:none) Aspergillus niger contig An02c015... 122 3e-46
CU633899_368(CU633899|pid:none) Podospora anserina genomic DNA c... 120 6e-45
protein update 2009. 4.18
PSORT

psg: 0.32 gvh: 0.43 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
44.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SHF717 is nuc

5' end seq. ID SHF717F
5' end seq.
>SHF717F.Seq
AAATTTTTTATTTTTTTTTTTAAATTATCATTACATGTTCNATTGTAAAATATTTCACAN
ATTTTTTTTATTTTAAAATAAATTTCCGCAATTCCAACAAATAAAAAGAAATTATAGAGA
TAAAATTTAATATAATATAATATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 163
3' end seq. ID SHF717Z
3' end seq.
>SHF717Z.Seq
NNNNNNNNNNCAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCA
NTGCCATTGTTGCGGAAACTTGTGCACCTTATACCGTTTTACCAGGTCTAATCAATGAAT
ATCGTATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCCTCTTTG
AATATANNGGCGAAATGGGTAAAGACTATATTTACGCCGTAACCTACCNTACTCGAAGAT
GCACTCATGGATAGAGATGCTGTACATCGTCAAACCGCTTGATCTGCAATTNAACATATT
TCATTGGGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTT
TGGCCNAATGTTTTNGAAACTTNTCCACATGTTAT
Length of 3' end seq. 395
Connected seq. ID SHF717P
Connected seq.
>SHF717P.Seq
AAATTTTTTATTTTTTTTTTTAAATTATCATTACATGTTCNATTGTAAAATATTTCACAN
ATTTTTTTTATTTTAAAATAAATTTCCGCAATTCCAACAAATAAAAAGAAATTATAGAGA
TAAAATTTAATATAATATAATATAAAAAAAAAA----------CAATTTGAAAGTTCAAG
ATCGTCAAAACAGAGTTTGTACAACCGTTGCCANTGCCATTGTTGCGGAAACTTGTGCAC
CTTATACCGTTTTACCAGGTCTAATCAATGAATATCGTATTCCAGAGTTGAATGTTCAAA
ATGGTGTTTTGAAATCTTTATCTTTCCTCTTTGAATATANNGGCGAAATGGGTAAAGACT
ATATTTACGCCGTAACCTACCNTACTCGAAGATGCACTCATGGATAGAGATGCTGTACAT
CGTCAAACCGCTTGATCTGCAATTNAACATATTTCATTGGGTGTAATGGGTTTAGGTTGT
GAAGATTCACTCACTCATTTACTCAATTACGTTTGGCCNAATGTTTTNGAAACTTNTCCA
CATGTTAT
Length of connected seq. 538
Full length Seq ID -
Full length Seq. -
Length of full length seq. -