SHF713
Library SH
(Link to library)
Clone ID SHF713
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13054-1
Original site URL
Representative seq. ID SHF713P
(Link to Original site)
Representative DNA sequence
>SHF713 (SHF713Q) /CSM/SH/SHF7-A/SHF713Q.Seq.d/
AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATTCACAAATAAA
ATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAAAGTTGACAAA
AATGTTAGATTAGACCGTAGATCTTGTGCAGCTTACAGAGGCACTGAAAAGAAGAATGGA
CATGGTCAATATGGTTGGGGCGATATCAACGATGAAATCCAGGCTGGTGAAGAAGAATTC
TACGAAGAACAAGAGGAACTTAAGAAATAGTTACCTTTCATGTACTCTTTCTCTCCCTTC
AAATAAAAATTGTATAAATGTACATAAAAAAAAAAAAAAAAAAANTAACCTTTTAAAAAA
AAAAXXXXXXXXXXAGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAA
TATTCACAAATAAAATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAG
AAAAAGTTGACAAAAATGTTAGATTAGACCGTAGATCTTGTGCAGCTTA
sequence update 2002.10.25
Translated Amino Acid sequence
akn*qsk*i*sitrkysqik*yniinniytkwffqkkltkmld*TVDLVQLTEALKRRMD
MVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHKKKKKKXNLLKK
K---

---SKKLAKQINIINYKKIFTNKII*ynk*yiykmvlsekvdknvrldrrscaa


Translated Amino Acid sequence (All Frames)
Frame A:
skklakqiniinykkiftnkii*ynk*yiykmvlsekvdknvrldrrscaayrgtekkng
hgqygwgdindeiqageeefyeeqeelkk*lpfmysfspfk*klykct*kkkkkx*pfkk
k---

---SKKLAKQINIINYKKIFTNKII*ynk*yiykmvlsekvdknvrldrrscaa

Frame B:
akn*qsk*i*sitrkysqik*yniinniytkwffqkkltkmld*TVDLVQLTEALKRRMD
MVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHKKKKKKXNLLKK
K---

---akn*qsk*i*sitrkysqik*yniinniytkwffqkkltkmld*tvdlvql

Frame C:
qkiskankynqlqenihk*nnii**iiyiqngsfrks*qkc*irp*ilcslqrh*keewt
wsiwlgryqr*npgw*rrilrrtrgt*eivtfhvlflslqikiv*myikkkkkkxtf*kk
---

---qkiskankynqlqenihk*nnii**iiyiqngsfrks*qkc*irp*ilcsl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ204 (VSJ204Q) /CSM/VS/VSJ2-A/VSJ204Q.Seq.d/ 468 e-131
VSI262 (VSI262Q) /CSM/VS/VSI2-C/VSI262Q.Seq.d/ 468 e-131
VSH704 (VSH704Q) /CSM/VS/VSH7-A/VSH704Q.Seq.d/ 468 e-131
VSG784 (VSG784Q) /CSM/VS/VSG7-D/VSG784Q.Seq.d/ 468 e-131
VSF426 (VSF426Q) /CSM/VS/VSF4-B/VSF426Q.Seq.d/ 468 e-131
VSF115 (VSF115Q) /CSM/VS/VSF1-A/VSF115Q.Seq.d/ 468 e-131
VHH862 (VHH862Q) /CSM/VH/VHH8-C/VHH862Q.Seq.d/ 468 e-131
SSM760 (SSM760Q) /CSM/SS/SSM7-C/SSM760Q.Seq.d/ 468 e-131
SSM163 (SSM163Q) /CSM/SS/SSM1-C/SSM163Q.Seq.d/ 468 e-131
SSG405 (SSG405Q) /CSM/SS/SSG4-A/SSG405Q.Seq.d/ 468 e-131

own update 2002.12. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF203735|AF203735.1 Dictyostelium discoideum culmination specific protein 45D (45D) mRNA, complete cds. 468 e-128 1
AC150758|AC150758.6 Bos taurus clone CH240-151J4, WORKING DRAFT SEQUENCE, 33 unordered pieces. 40 0.11 2
AC006222|AC006222.1 Homo sapiens, clone hRPK.12_A_1, complete sequence. 32 0.43 2
AC024372|AC024372.1 Homo sapiens chromosome 17 clone RP11-392N16 map 17, LOW-PASS SEQUENCE SAMPLING. 38 0.48 2
BX927141|BX927141.7 Human DNA sequence from clone DAMA-50J3 on chromosome 6. 38 0.71 2
DU881772|DU881772.1 389045 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0209K20 3, genomic survey sequence. 46 0.79 1
DU881586|DU881586.1 388737 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0209E10 3, genomic survey sequence. 46 0.79 1
DU090172|DU090172.1 316669 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0107K03 3, genomic survey sequence. 46 0.79 1
DU050134|DU050134.1 144374 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0011N13 3, genomic survey sequence. 46 0.79 1
CR938719|CR938719.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone DAAP-264O7. 38 0.98 2
dna update 2006. 3.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF203735_1(AF203735|pid:none) Dictyostelium discoideum culminati... 103 3e-21
AC006577_14(AC006577|pid:none) Sequence of BAC F15I1 from Arabid... 32 9.5

protein update 2008.11.17
PSORT

psg: 0.75 gvh: 0.44 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.39 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SHF713 is nuc

5' end seq. ID SHF713F
5' end seq.
>SHF713F.Seq
AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATTCACAAATAAA
ATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAAAGTTGACAAA
AATGTTAGATTAGACCGTAGATCTTGTGCAGCTTACAGAGGCACTGAAAAGAAGAATGGA
CATGGTCAATATGGTTGGGGCGATATCAACGATGAAATCCAGGCTGGTGAAGAAGAATTC
TACGAAGAACAAGAGGAACTTAAGAAATAGTTACCTTTCATGTACTCTTTCTCTCCCTTC
AAATAAAAATTGTATAAATGTACATAAAAAAAAAAAAAAAAAAANTAACCTTTTAAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 374
3' end seq. ID SHF713Z
3' end seq.
>SHF713Z.Seq
NNNNNNNNNNAGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATT
CACAAATAAAATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAA
AGTTGACAAAAATGTTAGATTAGACCGTAGATCTTGTGCAGCTTA
Length of 3' end seq. 165
Connected seq. ID SHF713P
Connected seq.
>SHF713P.Seq
AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATTCACAAATAAA
ATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAAAGTTGACAAA
AATGTTAGATTAGACCGTAGATCTTGTGCAGCTTACAGAGGCACTGAAAAGAAGAATGGA
CATGGTCAATATGGTTGGGGCGATATCAACGATGAAATCCAGGCTGGTGAAGAAGAATTC
TACGAAGAACAAGAGGAACTTAAGAAATAGTTACCTTTCATGTACTCTTTCTCTCCCTTC
AAATAAAAATTGTATAAATGTACATAAAAAAAAAAAAAAAAAAANTAACCTTTTAAAAAA
AAAA----------AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAA
TATTCACAAATAAAATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAG
AAAAAGTTGACAAAAATGTTAGATTAGACCGTAGATCTTGTGCAGCTTA
Length of connected seq. 519
Full length Seq ID -
Full length Seq. -
Length of full length seq. -