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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF713
Library SH
(Link to library)
Clone ID SHF713
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13054-1
Original site URL
Representative seq. ID SHF713P
(Link to Original site)
Representative DNA sequence 
>SHF713 (SHF713Q) /CSM/SH/SHF7-A/SHF713Q.Seq.d/
AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATTCACAAATAAA
ATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAAAGTTGACAAA
AATGTTAGATTAGACCGTAGATCTTGTGCAGCTTACAGAGGCACTGAAAAGAAGAATGGA
CATGGTCAATATGGTTGGGGCGATATCAACGATGAAATCCAGGCTGGTGAAGAAGAATTC
TACGAAGAACAAGAGGAACTTAAGAAATAGTTACCTTTCATGTACTCTTTCTCTCCCTTC
AAATAAAAATTGTATAAATGTACATAAAAAAAAAAAAAAAAAAANTAACCTTTTAAAAAA
AAAAXXXXXXXXXXAGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAA
TATTCACAAATAAAATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAG
AAAAAGTTGACAAAAATGTTAGATTAGACCGTAGATCTTGTGCAGCTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
akn*qsk*i*sitrkysqik*yniinniytkwffqkkltkmld*TVDLVQLTEALKRRMD
MVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHKKKKKKXNLLKK
K---

---SKKLAKQINIINYKKIFTNKII*ynk*yiykmvlsekvdknvrldrrscaa
Translated Amino Acid sequence (All Frames) 
Frame A:
skklakqiniinykkiftnkii*ynk*yiykmvlsekvdknvrldrrscaayrgtekkng
hgqygwgdindeiqageeefyeeqeelkk*lpfmysfspfk*klykct*kkkkkx*pfkk
k---

---SKKLAKQINIINYKKIFTNKII*ynk*yiykmvlsekvdknvrldrrscaa

Frame B:
akn*qsk*i*sitrkysqik*yniinniytkwffqkkltkmld*TVDLVQLTEALKRRMD
MVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHKKKKKKXNLLKK
K---

---akn*qsk*i*sitrkysqik*yniinniytkwffqkkltkmld*tvdlvql

Frame C:
qkiskankynqlqenihk*nnii**iiyiqngsfrks*qkc*irp*ilcslqrh*keewt
wsiwlgryqr*npgw*rrilrrtrgt*eivtfhvlflslqikiv*myikkkkkkxtf*kk
---

---qkiskankynqlqenihk*nnii**iiyiqngsfrks*qkc*irp*ilcsl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ204 (VSJ204Q) /CSM/VS/VSJ2-A/VSJ204Q.Seq.d/                        468   e-131
VSI262 (VSI262Q) /CSM/VS/VSI2-C/VSI262Q.Seq.d/                        468   e-131
VSH704 (VSH704Q) /CSM/VS/VSH7-A/VSH704Q.Seq.d/                        468   e-131
VSG784 (VSG784Q) /CSM/VS/VSG7-D/VSG784Q.Seq.d/                        468   e-131
VSF426 (VSF426Q) /CSM/VS/VSF4-B/VSF426Q.Seq.d/                        468   e-131
VSF115 (VSF115Q) /CSM/VS/VSF1-A/VSF115Q.Seq.d/                        468   e-131
VHH862 (VHH862Q) /CSM/VH/VHH8-C/VHH862Q.Seq.d/                        468   e-131
SSM760 (SSM760Q) /CSM/SS/SSM7-C/SSM760Q.Seq.d/                        468   e-131
SSM163 (SSM163Q) /CSM/SS/SSM1-C/SSM163Q.Seq.d/                        468   e-131
SSG405 (SSG405Q) /CSM/SS/SSG4-A/SSG405Q.Seq.d/                        468   e-131
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF203735|AF203735.1 Dictyostelium discoideum culmination specific protein 45D (45D) mRNA, complete cds.   468   e-128  1
AC150758|AC150758.6 Bos taurus clone CH240-151J4, WORKING DRAFT SEQUENCE, 33 unordered pieces.    40   0.11   2
AC006222|AC006222.1 Homo sapiens, clone hRPK.12_A_1, complete sequence.    32   0.43   2
AC024372|AC024372.1 Homo sapiens chromosome 17 clone RP11-392N16 map 17, LOW-PASS SEQUENCE SAMPLING.    38   0.48   2
BX927141|BX927141.7 Human DNA sequence from clone DAMA-50J3 on chromosome 6.    38   0.71   2
DU881772|DU881772.1 389045 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0209K20 3, genomic survey sequence.    46   0.79   1
DU881586|DU881586.1 388737 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0209E10 3, genomic survey sequence.    46   0.79   1
DU090172|DU090172.1 316669 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0107K03 3, genomic survey sequence.    46   0.79   1
DU050134|DU050134.1 144374 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0011N13 3, genomic survey sequence.    46   0.79   1
CR938719|CR938719.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  DAAP-264O7.    38   0.98   2
dna update 2006. 3.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF203735_1(AF203735|pid:none) Dictyostelium discoideum culminati...   103   3e-21
AC006577_14(AC006577|pid:none) Sequence of BAC F15I1 from Arabid...    32   9.5
protein update 2008.11.17
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.39  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHF713 is nuc
5' end seq. ID SHF713F
5' end seq. 
>SHF713F.Seq
AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATTCACAAATAAA
ATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAAAGTTGACAAA
AATGTTAGATTAGACCGTAGATCTTGTGCAGCTTACAGAGGCACTGAAAAGAAGAATGGA
CATGGTCAATATGGTTGGGGCGATATCAACGATGAAATCCAGGCTGGTGAAGAAGAATTC
TACGAAGAACAAGAGGAACTTAAGAAATAGTTACCTTTCATGTACTCTTTCTCTCCCTTC
AAATAAAAATTGTATAAATGTACATAAAAAAAAAAAAAAAAAAANTAACCTTTTAAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 374
3' end seq. ID SHF713Z
3' end seq. 
>SHF713Z.Seq
NNNNNNNNNNAGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATT
CACAAATAAAATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAA
AGTTGACAAAAATGTTAGATTAGACCGTAGATCTTGTGCAGCTTA
Length of 3' end seq. 165
Connected seq. ID SHF713P
Connected seq. 
>SHF713P.Seq
AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAATATTCACAAATAAA
ATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAGAAAAAGTTGACAAA
AATGTTAGATTAGACCGTAGATCTTGTGCAGCTTACAGAGGCACTGAAAAGAAGAATGGA
CATGGTCAATATGGTTGGGGCGATATCAACGATGAAATCCAGGCTGGTGAAGAAGAATTC
TACGAAGAACAAGAGGAACTTAAGAAATAGTTACCTTTCATGTACTCTTTCTCTCCCTTC
AAATAAAAATTGTATAAATGTACATAAAAAAAAAAAAAAAAAAANTAACCTTTTAAAAAA
AAAA----------AGCAAAAAATTAGCAAAGCAAATAAATATAATCAATTACAAGAAAA
TATTCACAAATAAAATAATATAATATAATAAATAATATATATACAAAATGGTTCTTTCAG
AAAAAGTTGACAAAAATGTTAGATTAGACCGTAGATCTTGTGCAGCTTA
Length of connected seq. 519
Full length Seq ID -
Full length Seq. -
Length of full length seq. -