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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF635
Library SH
(Link to library)
Clone ID SHF635
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11380-1
Original site URL
Representative seq. ID SHF635P
(Link to Original site)
Representative DNA sequence 
>SHF635 (SHF635Q) /CSM/SH/SHF6-B/SHF635Q.Seq.d/
TAGCTTCAGTTCCAATAGCATCAATATCTACATTTGTTCCTTTACAAGTACCAACACCAC
CAACATCAGTATTCTTCCCAACAACAACAACAACAACACCGGTTGCCACAACAAATTTAG
AATCATCAATGAAATTTAATGAATTTGTGACATCATTTAATAATATTTCAATTGGTGATA
AATCAATTTATCAAGAAGATTCAACTGAAAATGAATATAGAAAATTATTTGTAAATAATC
GTAATGATTCAAAATTGAATAATTTATATTTACATTGTGAAAAGGTATTTAAAAGTAAAC
CAACCACCTCTGAATTACCAAATGTGAATGGTGTCGATTGTATTATGGGATTCAATGCAA
AACAACATTCATTTTCAAACGATATCAAGTTTAAACAAGAATGGAATAGATTTAGTAATA
ATATGTTTGATGGTTTCAATTGGTCCAATGTATTTATTGCAGGTGGGTTCAGTTTTGGGT
TGTTCATTAGAAGGTGGTATCATTGGTAATACAGGTTTTCAAAATTCAGATATTGATATC
TTCCTCTATGGTTTATCAGAGGATGGTGCCAATAGTAAACTCGATGAAATCGAACAATTC
ATTAAATCAAAATCACCACAAGCTCAAATGGCTCGTACAAAATATGCAAXXXXXXXXXXG
TGGTGGTTTTGGTAGTACTGCTCAATCATTTGGAGGACCAGGTCAATCATTTGGAGGTCC
AGGTCAATCATTCGGTCCAAAACCAATTGCAAGTGGTGGTTTTGGTAGTACTGCTATACC
ATTTGGAGGACCAGGTCAATCATTTGGAGGATCGGGCTACAAGTGGTGGCTTTGGTAGCA
CTGCTCAATCATTTGGAGGTCCAAAACCAACCACAATTGGAAGCAGTGGTTTTGGTAGTA
CTGCTGTATCATTTGGAGGACCAGGTCAACCATTTGGAGGATCGGCCACAAGTGGTGGTT
TTGGATCATCAACACCACAATCAACTCCAGCTTTTCCAAGTTCATTTGGAATTGGAGGTA
AATTTGCTGCTAAAATTCCACCATCAGCCTCTATCCCTGNTAGTGGTTTTGTCCNTCTTG
CCTCAAACATATCTGCAACTCCAACTGGTTTATTCAGCAATACCCAACATTCTCTAAAAA
ATATTCCACAAAATATGGGTGGTAGTAGTGTATCAAACGTTTNTCTTTCTATTGCTAAAC
CTGCCACACTACTCAATTCTACACAATTCTTGGAATCCTCAGTTATGGCTCAATGTTTAT
ACTTGGTAGATGATTTATCAACAACAAAGAAATTACCAGATCAAACCGTAAAAAGAATTA
AAGAATTACTTTTCTCTCTTTATTTACCAATCTTTAATTGTTTTGAAGCTTTCCTTTTAA
ATACAAATGAAAAAGCTTTAATTGAGAATCTTTTATGGCTTTAAAAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
*lqfq*hqylhlflykyqhhqhqyssqqqqqqhrlpqqi*nhq*nlmnl*hhliifqlvi
nqfikkiqlkmnienyl*iivmiqn*iiyiyivkrylkvnqpplnyqm*MVSIVLWDSMQ
NNIHFQTISSLNKNGIDLVIICLMVSIGPMYLLQVGSVLGCSLEGGIIGNTGFQNSDIDI
FLYGLSEDGANSKLDEIEQFIKSKSPQAQMARTKYA---

---VVVLVVLLNHLEDQVNHLEVQVNHSVQNQLQVVVLVVLLYHLEDQVNHLEDRATSGG
FGSTAQSFGGPKPTTIGSSGFGSTAVSFGGPGQPFGGSATSGGFGSSTPQSTPAFPSSFG
IGGKFAAKIPPSASIPXSGFVXLASNISATPTGLFSNTQHSLKNIPQNMGGSSVSNVXLS
IAKPATLLNSTQFLESSVMAQCLYLVDDLSTTKKLPDQTVKRIKELLFSLYLPIFNCFEA
FLLNTNEKALIENLLWL*ki
Translated Amino Acid sequence (All Frames) 
Frame A:
*lqfq*hqylhlflykyqhhqhqyssqqqqqqhrlpqqi*nhq*nlmnl*hhliifqlvi
nqfikkiqlkmnienyl*iivmiqn*iiyiyivkrylkvnqpplnyqm*MVSIVLWDSMQ
NNIHFQTISSLNKNGIDLVIICLMVSIGPMYLLQVGSVLGCSLEGGIIGNTGFQNSDIDI
FLYGLSEDGANSKLDEIEQFIKSKSPQAQMARTKYA---

---VVVLVVLLNHLEDQVNHLEVQVNHSVQNQLQVVVLVVLLYHLEDQVNHLEDRATSGG
FGSTAQSFGGPKPTTIGSSGFGSTAVSFGGPGQPFGGSATSGGFGSSTPQSTPAFPSSFG
IGGKFAAKIPPSASIPXSGFVXLASNISATPTGLFSNTQHSLKNIPQNMGGSSVSNVXLS
IAKPATLLNSTQFLESSVMAQCLYLVDDLSTTKKLPDQTVKRIKELLFSLYLPIFNCFEA
FLLNTNEKALIENLLWL*ki

Frame B:
sfssnsiniyicsftstnttnisilpnnnnnntgchnkfriinei**icdii**yfnw**
inlsrrfn*k*i*kiick*s**fkie*fiftl*kgi*k*tnhl*itkcewcrlyygiqck
ttfifkryqv*trme*i***yv*wfqlvqciycrwvqfwvvh*kvvslviqvfkiqilis
ssmvyqrmvpivnsmksnnslnqnhhklkwlvqnmq---

---wwfw*ycsiiwrtrsiiwrsrsiirsktnckwwfw*ycytiwrtrsiiwriglqvva
lvallnhlevqnqpqleavvlvvllyhledqvnhledrpqvvvldhqhhnqlqlfqvhle
levnlllkfhhqplslxvvlsxlpqtylqlqlvysaipnil*kifhkiwvvvvyqtfxfl
llnlphysilhnswnpqlwlnvytw*miyqqqrnyqikp*kelknyfslfiyqslivlkl
sf*iqmkkl*lrifygfkkl

Frame C:
asvpiasistfvplqvptpptsvffpttttttpvattnlessmkfnefvtsfnnisigdk
siyqedsteneyrklfvnnrndsklnnlylhcekvfkskpttselpnvngvdcimgfnak
qhsfsndikfkqewnrfsnnmfdgfnwsnvfiaggfsfglfirrwyhw*yrfskfry*yl
plwfirgwcq**tr*nrtih*ikittssngsykic---

---ggfgstaqsfggpgqsfggpgqsfgpkpiasggfgstaipfggpgqsfggsgykwwl
w*hcsiiwrsktnhnwkqwfw*ycciiwrtrstiwrighkwwfwiinttinssfskfiwn
wr*icc*nstislypx*wfcpsclkhicnsnwfiqqyptfskkystkygw**cikrxsfy
c*tchttqfytilgilsygsmfilgr*finnkeitrsnrkkn*ritflslftnl*lf*sf
pfkyk*ksfn*esfmalkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF635 (SHF635Q) /CSM/SH/SHF6-B/SHF635Q.Seq.d/                       2565   0.0
SHF132 (SHF132Q) /CSM/SH/SHF1-B/SHF132Q.Seq.d/                       1475   0.0
VHK513 (VHK513Q) /CSM/VH/VHK5-A/VHK513Q.Seq.d/                       1459   0.0
VHO252 (VHO252Q) /CSM/VH/VHO2-C/VHO252Q.Seq.d/                       1388   0.0
VHD643 (VHD643Q) /CSM/VH/VHD6-B/VHD643Q.Seq.d/                       1324   0.0
AHH474 (AHH474Q) /CSM/AH/AHH4-D/AHH474Q.Seq.d/                       1029   0.0
VHF420 (VHF420Q) /CSM/VH/VHF4-A/VHF420Q.Seq.d/                        969   0.0
VHK243 (VHK243Q) /CSM/VH/VHK2-B/VHK243Q.Seq.d/                        892   0.0
VHI446 (VHI446Q) /CSM/VH/VHI4-B/VHI446Q.Seq.d/                        753   0.0
VHD142 (VHD142Q) /CSM/VH/VHD1-B/VHD142Q.Seq.d/                        575   e-163
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD256609|CD256609.1 AGENCOURT_14165334 NICHD_XGC_Brn1 Xenopus laevis cDNA cloneIMAGE:6951750 5', mRNA sequence.    38   0.042  3
AC141784|AC141784.1 Apis mellifera clone CH224-59E8, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   0.13   2
BM278816|BM278816.1 As_tgz_67G12_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_67G12 5', mRNA sequence.    36   0.48   2
CT188711|CT188711.1 Sus scrofa genomic clone PigE-74G17, genomic survey sequence.    48   0.56   1
AF108423|AF108423.1 Fugu rubripes immunoglobulin heavy chain gene cluster, partial sequence.    48   0.56   1
CP000084|CP000084.1 Candidatus Pelagibacter ubique HTCC1062, complete genome.    36   0.75   19
AJ238883|AJ238883.1 Dictyostelium discoideum mRNA for guanylyl cyclase.    36   0.90   3
AC128775|AC128775.3 Rattus norvegicus clone CH230-429N19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   1.2    4
U32804|U32804.1 Haemophilus influenzae Rd section 119 of 163 of the complete genome.    40   1.4    3
BH605242|BH605242.1 BOGKL06TF BOGK Brassica oleracea genomic clone BOGKL06, DNA sequence.    38   1.7    3
dna update 2006. 3.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633901_197(CU633901|pid:none) Podospora anserina genomic DNA c...    34   0.16
AM920427_808(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    33   0.74
CP000481_1655(CP000481|pid:none) Acidothermus cellulolyticus 11B...    36   3.7
AL844502_79(AL844502|pid:none) Plasmodium falciparum chromosome ...    36   3.7
AL844508_65(AL844508|pid:none) Plasmodium falciparum strain 3D7,...    35   4.8
AM263198_928(AM263198|pid:none) Listeria welshimeri serovar 6b s...    35   8.3
protein update 2009. 4.18
PSORT 

 psg: 0.75  gvh: 0.58  alm: 0.27  top: 0.37  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHF635 is cyt
5' end seq. ID SHF635F
5' end seq. 
>SHF635F.Seq
TAGCTTCAGTTCCAATAGCATCAATATCTACATTTGTTCCTTTACAAGTACCAACACCAC
CAACATCAGTATTCTTCCCAACAACAACAACAACAACACCGGTTGCCACAACAAATTTAG
AATCATCAATGAAATTTAATGAATTTGTGACATCATTTAATAATATTTCAATTGGTGATA
AATCAATTTATCAAGAAGATTCAACTGAAAATGAATATAGAAAATTATTTGTAAATAATC
GTAATGATTCAAAATTGAATAATTTATATTTACATTGTGAAAAGGTATTTAAAAGTAAAC
CAACCACCTCTGAATTACCAAATGTGAATGGTGTCGATTGTATTATGGGATTCAATGCAA
AACAACATTCATTTTCAAACGATATCAAGTTTAAACAAGAATGGAATAGATTTAGTAATA
ATATGTTTGATGGTTTCAATTGGTCCAATGTATTTATTGCAGGTGGGTTCAGTTTTGGGT
TGTTCATTAGAAGGTGGTATCATTGGTAATACAGGTTTTCAAAATTCAGATATTGATATC
TTCCTCTATGGTTTATCAGAGGATGGTGCCAATAGTAAACTCGATGAAATCGAACAATTC
ATTAAATCAAAATCACCACAAGCTCAAATGGCTCGTACAAAATATGCAANNNNNNNNNN
Length of 5' end seq. 659
3' end seq. ID SHF635Z
3' end seq. 
>SHF635Z.Seq
NNNNNNNNNNGTGGTGGTTTTGGTAGTACTGCTCAATCATTTGGAGGACCAGGTCAATCA
TTTGGAGGTCCAGGTCAATCATTCGGTCCAAAACCAATTGCAAGTGGTGGTTTTGGTAGT
ACTGCTATACCATTTGGAGGACCAGGTCAATCATTTGGAGGATCGGGCTACAAGTGGTGG
CTTTGGTAGCACTGCTCAATCATTTGGAGGTCCAAAACCAACCACAATTGGAAGCAGTGG
TTTTGGTAGTACTGCTGTATCATTTGGAGGACCAGGTCAACCATTTGGAGGATCGGCCAC
AAGTGGTGGTTTTGGATCATCAACACCACAATCAACTCCAGCTTTTCCAAGTTCATTTGG
AATTGGAGGTAAATTTGCTGCTAAAATTCCACCATCAGCCTCTATCCCTGNTAGTGGTTT
TGTCCNTCTTGCCTCAAACATATCTGCAACTCCAACTGGTTTATTCAGCAATACCCAACA
TTCTCTAAAAAATATTCCACAAAATATGGGTGGTAGTAGTGTATCAAACGTTTNTCTTTC
TATTGCTAAACCTGCCACACTACTCAATTCTACACAATTCTTGGAATCCTCAGTTATGGC
TCAATGTTTATACTTGGTAGATGATTTATCAACAACAAAGAAATTACCAGATCAAACCGT
AAAAAGAATTAAAGAATTACTTTTCTCTCTTTATTTACCAATCTTTAATTGTTTTGAAGC
TTTCCTTTTAAATACAAATGAAAAAGCTTTAATTGAGAATCTTTTATGGCTTTAAAAAAT
TA
Length of 3' end seq. 782
Connected seq. ID SHF635P
Connected seq. 
>SHF635P.Seq
TAGCTTCAGTTCCAATAGCATCAATATCTACATTTGTTCCTTTACAAGTACCAACACCAC
CAACATCAGTATTCTTCCCAACAACAACAACAACAACACCGGTTGCCACAACAAATTTAG
AATCATCAATGAAATTTAATGAATTTGTGACATCATTTAATAATATTTCAATTGGTGATA
AATCAATTTATCAAGAAGATTCAACTGAAAATGAATATAGAAAATTATTTGTAAATAATC
GTAATGATTCAAAATTGAATAATTTATATTTACATTGTGAAAAGGTATTTAAAAGTAAAC
CAACCACCTCTGAATTACCAAATGTGAATGGTGTCGATTGTATTATGGGATTCAATGCAA
AACAACATTCATTTTCAAACGATATCAAGTTTAAACAAGAATGGAATAGATTTAGTAATA
ATATGTTTGATGGTTTCAATTGGTCCAATGTATTTATTGCAGGTGGGTTCAGTTTTGGGT
TGTTCATTAGAAGGTGGTATCATTGGTAATACAGGTTTTCAAAATTCAGATATTGATATC
TTCCTCTATGGTTTATCAGAGGATGGTGCCAATAGTAAACTCGATGAAATCGAACAATTC
ATTAAATCAAAATCACCACAAGCTCAAATGGCTCGTACAAAATATGCAA----------G
TGGTGGTTTTGGTAGTACTGCTCAATCATTTGGAGGACCAGGTCAATCATTTGGAGGTCC
AGGTCAATCATTCGGTCCAAAACCAATTGCAAGTGGTGGTTTTGGTAGTACTGCTATACC
ATTTGGAGGACCAGGTCAATCATTTGGAGGATCGGGCTACAAGTGGTGGCTTTGGTAGCA
CTGCTCAATCATTTGGAGGTCCAAAACCAACCACAATTGGAAGCAGTGGTTTTGGTAGTA
CTGCTGTATCATTTGGAGGACCAGGTCAACCATTTGGAGGATCGGCCACAAGTGGTGGTT
TTGGATCATCAACACCACAATCAACTCCAGCTTTTCCAAGTTCATTTGGAATTGGAGGTA
AATTTGCTGCTAAAATTCCACCATCAGCCTCTATCCCTGNTAGTGGTTTTGTCCNTCTTG
CCTCAAACATATCTGCAACTCCAACTGGTTTATTCAGCAATACCCAACATTCTCTAAAAA
ATATTCCACAAAATATGGGTGGTAGTAGTGTATCAAACGTTTNTCTTTCTATTGCTAAAC
CTGCCACACTACTCAATTCTACACAATTCTTGGAATCCTCAGTTATGGCTCAATGTTTAT
ACTTGGTAGATGATTTATCAACAACAAAGAAATTACCAGATCAAACCGTAAAAAGAATTA
AAGAATTACTTTTCTCTCTTTATTTACCAATCTTTAATTGTTTTGAAGCTTTCCTTTTAA
ATACAAATGAAAAAGCTTTAATTGAGAATCTTTTATGGCTTTAAAAAATTA
Length of connected seq. 1421
Full length Seq ID -
Full length Seq. -
Length of full length seq. -