AFJ360
Library AF
(Link to library)
Clone ID AFJ360
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16593-1
Original site URL
Representative seq. ID AFJ360P
(Link to Original site)
Representative DNA sequence
>AFJ360 (AFJ360Q) /CSM/AF/AFJ3-C/AFJ360Q.Seq.d/
ACTTTTTTCAATCTAACAAAAGAAAAATAAAAATGAATAAATTCATTTTATTATTATCAT
TAGTCACATTATCATGTGTACTTGCAGTTCCACAACTCCCAGCTGCTCAACAATATTATA
TGAAAGGTTCATTCAATATTCCATATTTCAATATTGTTGAACCAATTGAATTAATTTATG
ATTCAGTTAATAATCGTCAATATATTAGTGTTTACAATGGTATGGATATTACCATCAACT
TTTACAATCAAGATAATACATACAATGTAGGTCCAGTTAAATATGATATGGTTTGTACCA
CTACCCCAGGTAATGGTTCATTAGTTAATGTTTTACCAACTGAACCTTCATCATGGGTTT
ACAATGGTACATCAACTGTTAACGGTGTCCAAGTCTTTGGTTACAGTCAAAAGATCACTC
AATATGGTCGTACTGGTTTCTACAACTTTTACGTTGATGCCAACGGTGTTCCAGTTCAAT
TCTATATGGATGGTGTCGATTATGTATTTGGTAGTCACCCAGATGTTTACGTATTAAACT
TTGATATCTACACCACCGATATCAGCTCATACGAATCATACTTTGATATTCCAGNTCTCT
GTAATAACGCAXXXXXXXXXXCCATCCGTCACTGGTGCTGACTCTGTCCACGACGACGAA
TCACTCAGATCAATTCCATCAACTGTCGATTGGAGAAATCAAAACTGTGTTACCCCAGTC
AAAGATCAAGGTATTTGCGGTTCATGTTGGACTTTTGGTTCAACTGGTTCATTAGAAGGT
ACCAACTGTGTCACCAACGGTGAATTAGTCTCCCTCTCTGAACAACAATTAGTTGATTGT
GCTATCCTTACCGGTAGTCAAGGTTGTGGTGGTGGTTTTGCATCATCTGCATTCCAATAC
GTCATGGAAATTGGTAGTCTCGCCACCGAGTCCAACTATCCATACTTAATGCAAAATGGT
CTCTGCAGAGATAGAACTGTCACTCCATCAGGTGTTTCAATCACTGGTTACGTCAATGTT
ACCTCTGGTAGTGAATCTGCCCTTCAAAACGCTATCGCCACCACTGGTCCAGTCGCCATC
GCCATCGATGCCTCTGTTGATGATTTCCGTTACTACATGTCTGGTGTTTACAATAATCCA
GCCTGTAAAAATGGTTTAGATGATTTGGATCACGAAGTTTTAGCTATTGGTTATGGTACT
TATCAAGGTCAAGATTATTTCTTAGTTAAAAACTCTTGGTCAACTAACTGGGGTATGGAT
GGTTATGTTTACAGGCTAGAAATATAACAATTTATGTGGTGTTTCAAGTCAAGCCACCTA
TCCAATTCCAACAAAGAATTAATTTCTCAANAATCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
FFQSNKRKIKMNKFILLLSLVTLSCVLAVPQLPAAQQYYMKGSFNIPYFNIVEPIELIYD
SVNNRQYISVYNGMDITINFYNQDNTYNVGPVKYDMVCTTTPGNGSLVNVLPTEPSSWVY
NGTSTVNGVQVFGYSQKITQYGRTGFYNFYVDANGVPVQFYMDGVDYVFGSHPDVYVLNF
DIYTTDISSYESYFDIPXLCNNA---

---PSVTGADSVHDDESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCV
TNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNYPYLMQNGLCRD
RTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKN
GLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYRLEI*qfmwcfksshlsnsn
kelisqxs


Translated Amino Acid sequence (All Frames)
Frame A:
tffnltkek*k*insfyyyh*shyhvylqfhnsqllnnii*kvhsifhisillnqln*fm
iqliivnilvftmvwilpstftikiihtm*vqlnmiwfvplpqvmvh*lmfyqlnlhhgf
tmvhqlltvskslvtvkrslnmvvlvsttftlmptvfqfnsiwmvsimylvvtqmfty*t
listppisahtnhtlifqxsvit---

---PSVTGADSVHDDESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCV
TNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNYPYLMQNGLCRD
RTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKN
GLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYRLEI*qfmwcfksshlsnsn
kelisqxs

Frame B:
lfsi*qkknkne*ihfiiiishiimctcssttpscstilyerfiqysifqyc*tn*inl*
fs**ssiy*clqwygyyhqllqsr*yiqcrss*i*yglyhypr*wfis*cftn*tfimgl
qwyinc*rcpslwlqskdhsiwsywflqllr*cqrcsssilygwcrlciw*sprclrikl
*ylhhryqliriil*ysxsl**r---

---hpslvltlstttnhsdqfhqlsigeiktvlpqskikvfavhvgllvqlvh*kvptvs
ptvn*spslnnn*livlslpvvkvvvvvlhhlhsntswklvvsppsptiht*ckmvsaei
elslhqvfqslvtsmlplvvnlpfktlspplvqspspsmpllmisvttclvftiiqpvkm
v*miwitkf*llvmvlikvkiis*lktlgqltgvwmvmftg*kynnlcgvssqatypipt
kn*flxnp

Frame C:
FFQSNKRKIKMNKFILLLSLVTLSCVLAVPQLPAAQQYYMKGSFNIPYFNIVEPIELIYD
SVNNRQYISVYNGMDITINFYNQDNTYNVGPVKYDMVCTTTPGNGSLVNVLPTEPSSWVY
NGTSTVNGVQVFGYSQKITQYGRTGFYNFYVDANGVPVQFYMDGVDYVFGSHPDVYVLNF
DIYTTDISSYESYFDIPXLCNNA---

---irhwc*lcprrritqinsincrleksklcypsqrsrylrfmldfwfnwfirryqlch
qr*islpl*ttis*lcypyr*srlwwwfciicipirhgnw*srhrvqlsilnakwslqr*
nchsircfnhwlrqcylw**icpskryrhhwssrhrhrclc**fpllhvwclq*ssl*kw
fr*fgsrsfsywlwylsrsrlfls*kllvn*lgygwlclqarnitiyvvfqvkppiqfqq
rinfsxi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ360 (AFJ360Q) /CSM/AF/AFJ3-C/AFJ360Q.Seq.d/ 2553 0.0
VFO640 (VFO640Q) /CSM/VF/VFO6-B/VFO640Q.Seq.d/ 1400 0.0
VFI581 (VFI581Q) /CSM/VF/VFI5-D/VFI581Q.Seq.d/ 1350 0.0
CFG118 (CFG118Q) /CSM/CF/CFG1-A/CFG118Q.Seq.d/ 1338 0.0
SFD417 (SFD417Q) /CSM/SF/SFD4-A/SFD417Q.Seq.d/ 1320 0.0
SFL481 (SFL481Q) /CSM/SF/SFL4-D/SFL481Q.Seq.d/ 1318 0.0
SFI335 (SFI335Q) /CSM/SF/SFI3-B/SFI335Q.Seq.d/ 1316 0.0
SFI435 (SFI435Q) /CSM/SF/SFI4-B/SFI435Q.Seq.d/ 1314 0.0
VFO148 (VFO148Q) /CSM/VF/VFO1-B/VFO148Q.Seq.d/ 1257 0.0
AFE529 (AFE529Q) /CSM/AF/AFE5-B/AFE529Q.Seq.d/ 1257 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

S58669|S58669.1 Entamoeba histolytica cysteine proteinase precursor (ACP1) gene, partial cds. 54 1e-05 2
AZ547119|AZ547119.1 ENTFS26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 1e-05 2
AZ674505|AZ674505.1 ENTIZ88TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 1e-05 2
X87214|X87214.1 E.histolytica mRNA for cysteine proteinase. 54 2e-05 2
CD463608|CD463608.1 ETH1_45_A02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_45_A02_A002 5', mRNA sequence. 42 4e-04 3
X87213|X87213.1 E.dispar mRNA for cysteine proteinase. 54 7e-04 2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 42 9e-04 3
BQ834906|BQ834906.1 Po_ad_04H08_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_04H08 5' similar to O46030 CYSTEINE PROTEINASE. Sitophilus zeamais (maize weevil), mRNA sequence. 48 0.001 3
M27307|M27307.1 Entamoeba histolytica cysteine protease gene, partial cds. 54 0.006 1
BM401017|BM401017.1 5009-0-81-E05.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 54 0.006 1
dna update 2004. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 224 5e-57
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 222 1e-56
AF194426_1(AF194426|pid:none) Myxine glutinosa clone hicl20 cyst... 221 4e-56
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik... 214 2e-55
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,... 219 2e-55
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p... 212 5e-55
DQ459303_1(DQ459303|pid:none) Aedes aegypti cathepsin L (CAT-L1)... 217 8e-55
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr... 217 8e-55
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 214 1e-54
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae... 213 1e-54
protein update 2009. 4.23
PSORT

psg: 0.81 gvh: 0.92 alm: 0.21 top: 0.13 tms: 0.07 mit: 0.37 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal
4.0 %: plasma membrane

>> prediction for AFJ360 is cyt

5' end seq. ID AFJ360F
5' end seq.
>AFJ360F.Seq
ACTTTTTTCAATCTAACAAAAGAAAAATAAAAATGAATAAATTCATTTTATTATTATCAT
TAGTCACATTATCATGTGTACTTGCAGTTCCACAACTCCCAGCTGCTCAACAATATTATA
TGAAAGGTTCATTCAATATTCCATATTTCAATATTGTTGAACCAATTGAATTAATTTATG
ATTCAGTTAATAATCGTCAATATATTAGTGTTTACAATGGTATGGATATTACCATCAACT
TTTACAATCAAGATAATACATACAATGTAGGTCCAGTTAAATATGATATGGTTTGTACCA
CTACCCCAGGTAATGGTTCATTAGTTAATGTTTTACCAACTGAACCTTCATCATGGGTTT
ACAATGGTACATCAACTGTTAACGGTGTCCAAGTCTTTGGTTACAGTCAAAAGATCACTC
AATATGGTCGTACTGGTTTCTACAACTTTTACGTTGATGCCAACGGTGTTCCAGTTCAAT
TCTATATGGATGGTGTCGATTATGTATTTGGTAGTCACCCAGATGTTTACGTATTAAACT
TTGATATCTACACCACCGATATCAGCTCATACGAATCATACTTTGATATTCCAGNTCTCT
GTAATAACGCA----------
Length of 5' end seq. 611
3' end seq. ID AFJ360Z
3' end seq.
>AFJ360Z.Seq
----------CCATCCGTCACTGGTGCTGACTCTGTCCACGACGACGAATCACTCAGATC
AATTCCATCAACTGTCGATTGGAGAAATCAAAACTGTGTTACCCCAGTCAAAGATCAAGG
TATTTGCGGTTCATGTTGGACTTTTGGTTCAACTGGTTCATTAGAAGGTACCAACTGTGT
CACCAACGGTGAATTAGTCTCCCTCTCTGAACAACAATTAGTTGATTGTGCTATCCTTAC
CGGTAGTCAAGGTTGTGGTGGTGGTTTTGCATCATCTGCATTCCAATACGTCATGGAAAT
TGGTAGTCTCGCCACCGAGTCCAACTATCCATACTTAATGCAAAATGGTCTCTGCAGAGA
TAGAACTGTCACTCCATCAGGTGTTTCAATCACTGGTTACGTCAATGTTACCTCTGGTAG
TGAATCTGCCCTTCAAAACGCTATCGCCACCACTGGTCCAGTCGCCATCGCCATCGATGC
CTCTGTTGATGATTTCCGTTACTACATGTCTGGTGTTTACAATAATCCAGCCTGTAAAAA
TGGTTTAGATGATTTGGATCACGAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCA
AGATTATTTCTTAGTTAAAAACTCTTGGTCAACTAACTGGGGTATGGATGGTTATGTTTA
CAGGCTAGAAATATAACAATTTATGTGGTGTTTCAAGTCAAGCCACCTATCCAATTCCAA
CAAAGAATTAATTTCTCAANAATCCA
Length of 3' end seq. 736
Connected seq. ID AFJ360P
Connected seq.
>AFJ360P.Seq
ACTTTTTTCAATCTAACAAAAGAAAAATAAAAATGAATAAATTCATTTTATTATTATCAT
TAGTCACATTATCATGTGTACTTGCAGTTCCACAACTCCCAGCTGCTCAACAATATTATA
TGAAAGGTTCATTCAATATTCCATATTTCAATATTGTTGAACCAATTGAATTAATTTATG
ATTCAGTTAATAATCGTCAATATATTAGTGTTTACAATGGTATGGATATTACCATCAACT
TTTACAATCAAGATAATACATACAATGTAGGTCCAGTTAAATATGATATGGTTTGTACCA
CTACCCCAGGTAATGGTTCATTAGTTAATGTTTTACCAACTGAACCTTCATCATGGGTTT
ACAATGGTACATCAACTGTTAACGGTGTCCAAGTCTTTGGTTACAGTCAAAAGATCACTC
AATATGGTCGTACTGGTTTCTACAACTTTTACGTTGATGCCAACGGTGTTCCAGTTCAAT
TCTATATGGATGGTGTCGATTATGTATTTGGTAGTCACCCAGATGTTTACGTATTAAACT
TTGATATCTACACCACCGATATCAGCTCATACGAATCATACTTTGATATTCCAGNTCTCT
GTAATAACGCA----------CCATCCGTCACTGGTGCTGACTCTGTCCACGACGACGAA
TCACTCAGATCAATTCCATCAACTGTCGATTGGAGAAATCAAAACTGTGTTACCCCAGTC
AAAGATCAAGGTATTTGCGGTTCATGTTGGACTTTTGGTTCAACTGGTTCATTAGAAGGT
ACCAACTGTGTCACCAACGGTGAATTAGTCTCCCTCTCTGAACAACAATTAGTTGATTGT
GCTATCCTTACCGGTAGTCAAGGTTGTGGTGGTGGTTTTGCATCATCTGCATTCCAATAC
GTCATGGAAATTGGTAGTCTCGCCACCGAGTCCAACTATCCATACTTAATGCAAAATGGT
CTCTGCAGAGATAGAACTGTCACTCCATCAGGTGTTTCAATCACTGGTTACGTCAATGTT
ACCTCTGGTAGTGAATCTGCCCTTCAAAACGCTATCGCCACCACTGGTCCAGTCGCCATC
GCCATCGATGCCTCTGTTGATGATTTCCGTTACTACATGTCTGGTGTTTACAATAATCCA
GCCTGTAAAAATGGTTTAGATGATTTGGATCACGAAGTTTTAGCTATTGGTTATGGTACT
TATCAAGGTCAAGATTATTTCTTAGTTAAAAACTCTTGGTCAACTAACTGGGGTATGGAT
GGTTATGTTTACAGGCTAGAAATATAACAATTTATGTGGTGTTTCAAGTCAAGCCACCTA
TCCAATTCCAACAAAGAATTAATTTCTCAANAATCCA
Length of connected seq. 1347
Full length Seq ID -
Full length Seq. -
Length of full length seq. -