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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF526
Library SH
(Link to library)
Clone ID SHF526
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16508-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHF526 (SHF526Q) /CSM/SH/SHF5-B/SHF526Q.Seq.d/
XXXXXXXXXXGTGTNTTTATCACATCCATTACTCCCAATGTTTACAACCAGTNAACAATA
TTCAAACGATTGGAATTGTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACC
TTTACCAAATGGTNNAAAGATTCNAACTATACAANGGTTAGATAATCAAGATAATNCCAT
ACTTTTNNGTANTGAAAATATTTATCTAATTGATGGTCAANATTCACAAGATCCNCAAAA
ATATCACTTTAGATCTTTCAACTATANNTTCAACAATTACA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---XLSHPLLPMFTTSXQYSNDWNCQYQGVYSPLTSASPLPNGXKIXTIQXLDNQDNXIL
XXXENIYLIDGQXSQDPQKYHFRSFNYXFNNY
Translated Amino Acid sequence (All Frames) 
Frame A:
---cxyhihysqclqpvnniqtigivnikvfthh*lqphlyqmvxrfxlyxg*iikixpy
fxvxkifi*lmvxihkixknitldlstixstit


Frame B:
---vfitsitpnvynqxtifkrlelsisrclltidfsltftkwxkdsnytxvr*sr*xht
fxx*kylsn*wsxftrsxkisl*ifqlxxqql


Frame C:
---XLSHPLLPMFTTSXQYSNDWNCQYQGVYSPLTSASPLPNGXKIXTIQXLDNQDNXIL
XXXENIYLIDGQXSQDPQKYHFRSFNYXFNNY
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF526 (SHF526Q) /CSM/SH/SHF5-B/SHF526Q.Seq.d/                        454   e-127
AHP483 (AHP483Q) /CSM/AH/AHP4-D/AHP483Q.Seq.d/                        394   e-109
SHD583 (SHD583Q) /CSM/SH/SHD5-D/SHD583Q.Seq.d/                        385   e-106
AHF546 (AHF546Q) /CSM/AH/AHF5-B/AHF546Q.Seq.d/                        385   e-106
AHJ145 (AHJ145Q) /CSM/AH/AHJ1-B/AHJ145Q.Seq.d/                        383   e-105
AHB285 (AHB285Q) /CSM/AH/AHB2-D/AHB285Q.Seq.d/                        383   e-105
CHH456 (CHH456Q) /CSM/CH/CHH4-C/CHH456Q.Seq.d/                        381   e-105
AHE874 (AHE874Q) /CSM/AH/AHE8-D/AHE874Q.Seq.d/                        379   e-104
VHQ387 (VHQ387Q) /CSM/VH/VHQ3-D/VHQ387Q.Seq.d/                        379   e-104
VHQ325 (VHQ325Q) /CSM/VH/VHQ3-B/VHQ325Q.Seq.d/                        379   e-104
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds.   339   e-100  2
DU026258|DU026258.1 6860 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0033G23 3, genomic survey sequence.    34   1.1    2
DU090915|DU090915.1 219118 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0171N08 5, genomic survey sequence.    44   1.6    1
AC099115|AC099115.6 Rattus norvegicus clone CH230-171M20, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32   3.0    2
AC171714|AC171714.2 Bos taurus clone CH240-210C21, WORKING DRAFT SEQUENCE, 16 unordered pieces.    42   6.3    1
AC170206|AC170206.3 Macaca mulatta clone CH250-161F13, WORKING DRAFT SEQUENCE, 7 ordered pieces.    42   6.3    1
AC169214|AC169214.1 Macaca mulatta clone CH250-63B10, WORKING DRAFT SEQUENCE, 2 ordered pieces.    42   6.3    1
AC157037|AC157037.2 Bos taurus clone CH240-59I12, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    42   6.3    1
AC149450|AC149450.1 Papio anubis clone RP41-262I13, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   6.3    1
AC149114|AC149114.2 Papio anubis clone RP41-374M21, WORKING DRAFT SEQUENCE, 6 ordered pieces.    42   6.3    1
dna update 2006. 3.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   124   8e-28
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   124   8e-28
protein update 2009. 1.16
PSORT 

 psg: 0.91  gvh: 0.44  alm: 0.58  top: 0.37  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for SHF526 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHF526Z
3' end seq. 
>SHF526Z.Seq
NNNNNNNNNNGTGTNTTTATCACATCCATTACTCCCAATGTTTACAACCAGTNAACAATA
TTCAAACGATTGGAATTGTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACC
TTTACCAAATGGTNNAAAGATTCNAACTATACAANGGTTAGATAATCAAGATAATNCCAT
ACTTTTNNGTANTGAAAATATTTATCTAATTGATGGTCAANATTCACAAGATCCNCAAAA
ATATCACTTTAGATCTTTCAACTATANNTTCAACAATTACA
Length of 3' end seq. 281
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -