>SHF485 (SHF485Q) /CSM/SH/SHF4-D/SHF485Q.Seq.d/
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGTCCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACXXXXXXXXXXTAA
TCGATGGTAAACCATGTACACAACCTTGAAATCAACATTCACACTTATTCTAGTTTAACC
TGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAAT
ATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAA
TCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGT
ATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAA
AAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTT
AAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGC
GCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAGGAAATTATCTAGACTCCCA
CTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCA
ATAATATCCAATTNTAAATTAAACNTAAACCAAATTCACCAATCTATAATCAAATAATCA
ATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAA
TTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCA
AA

*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILLN
PNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTY
NYPCTSVYGRIKPLNIANKIVTPYNINLVQFTMRIQPGCGDLIINSGSRVIYNASYQTGD
IPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVEN---

---IDGKPCTQP*nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqx*ikxkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*
kksk

Frame A:
idpqlviske*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmiklfpff*
iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*edplish
itilvqvfmve*nl*i*qtkl*hhtisi*sssp*eynqavei*l*iqaqe*fimlhikle
iyqinqqsmtkeilpfkevtfttpklkliqmiplk---

---*smvnhvhnleinihtyssltcnvtnydemlkynysntkfnisisvdgqyfiaqifq
fkyestisysenkssgfpnemyigivaiiiflaliffaiktqvekyieerrarkafrsvd
nlrlklrekhaaeiakhysfgyesapkpnksyfydlgrklsrlplirccfkehtd*ilfp
nsnpiisnxklnxnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*in
kkka

Frame B:
ltrn**lvkneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssyfhsfk
sk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fhi
*lslykclw*nktfeyskqncntiqyqfspvhhenttrlwrfnykfrlksnl*cfisnwr
ytk*tnnr*prkyyhsrk*plqhpn*n*fk*sr*k---

---nrw*tmyttlkstftlilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsn
lnmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqli
iyvlnfvrnmllkslniihlvmkalqnqikvismi*egnyldshsldvvsknilikyyfq
iqiq*ypixn*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*i
kkkq

Frame C:
*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILLN
PNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTY
NYPCTSVYGRIKPLNIANKIVTPYNINLVQFTMRIQPGCGDLIINSGSRVIYNASYQTGD
IPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVEN---

---IDGKPCTQP*nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqx*ikxkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*
kksk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF485 (SHF485Q) /CSM/SH/SHF4-D/SHF485Q.Seq.d/                       2385   0.0
SHA686 (SHA686Q) /CSM/SH/SHA6-D/SHA686Q.Seq.d/                       1296   0.0
AHK772 (AHK772Q) /CSM/AH/AHK7-C/AHK772Q.Seq.d/                       1296   0.0
SHF693 (SHF693Q) /CSM/SH/SHF6-D/SHF693Q.Seq.d/                       1294   0.0
AHO522 (AHO522Q) /CSM/AH/AHO5-A/AHO522Q.Seq.d/                       1294   0.0
AHD460 (AHD460Q) /CSM/AH/AHD4-C/AHD460Q.Seq.d/                       1294   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1292   0.0
SHA327 (SHA327Q) /CSM/SH/SHA3-B/SHA327Q.Seq.d/                       1292   0.0
SHG285 (SHG285Q) /CSM/SH/SHG2-D/SHG285Q.Seq.d/                       1291   0.0
SHD222 (SHD222Q) /CSM/SH/SHD2-A/SHD222Q.Seq.d/                       1291   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   216   9e-86  12
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AC114778|AC114778.5 Homo sapiens chromosome 2 clone RP11-516O5, complete sequence.    34   0.30   7
DD010735|DD010735.1 Diagnosis of known genetic Parameters within the MHC.    36   0.53   16
DU571553|DU571553.1 OO__Ba0057P22.f OO__Ba Oryza officinalis genomic clone OO__Ba0057P22 5', genomic survey sequence.    48   0.54   1
CZ115922|CZ115922.1 OA_BBa0001A09.f OA_BBa Oryza alta genomic clone OA_BBa0001A09 5', genomic survey sequence.    48   0.54   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   393   e-108
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   392   e-107
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   392   e-107
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   392   e-107
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   254   1e-71
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   254   1e-71
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   254   2e-71
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   254   2e-71
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   253   4e-71
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   252   6e-71

 psg: 1.01  gvh: 0.44  alm: 0.31  top: 0.23  tms: 0.07  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHF485 is end

>SHF485F.Seq
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGTCCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACNNNNNNNNNN

>SHF485Z.Seq
NNNNNNNNNNTAATCGATGGTAAACCATGTACACAACCTTGAAATCAACATTCACACTTA
TTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAA
TACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCA
ATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGA
AATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAA
AACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGA
TAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATT
TGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAGGAAATT
ATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCC
AAATTCAAATCCAATAATATCCAATTNTAAATTAAACNTAAACCAAATTCACCAATCTAT
AATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAA
TATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAA
TAAAAAAAAAGCAAA

>SHF485P.Seq
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGTCCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAAC----------TAA
TCGATGGTAAACCATGTACACAACCTTGAAATCAACATTCACACTTATTCTAGTTTAACC
TGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAAT
ATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAA
TCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGT
ATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAA
AAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTT
AAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGC
GCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAGGAAATTATCTAGACTCCCA
CTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCA
ATAATATCCAATTNTAAATTAAACNTAAACCAAATTCACCAATCTATAATCAAATAATCA
ATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAA
TTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCA
AA