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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF413
Library SH
(Link to library)
Clone ID SHF413
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11861-1
Original site URL
Representative seq. ID SHF413P
(Link to Original site)
Representative DNA sequence 
>SHF413 (SHF413Q) /CSM/SH/SHF4-A/SHF413Q.Seq.d/
ATTATATTATTTAAATAATTATATGTATATATTTGTTTTTAAATAATGAAAAATTATTTT
TTTATAATTTTTTTTTAATATAAAAAGGACCTTATATTATTTCTAAAAATTATTTTTTAA
ATAAATTAAAAAAAAAAXXXXXXXXXXAATAATGAATCAAGCANCCAAGGNTTCCAAATA
ATGGATCATCCAAATAATGAATCCAAATAATGAATCATCGAATAACGAATCAAGTAGCCA
AGGTTCAACCAATGAATCATCCAAATAATGAATCATCGAATAATGAATCCAAGTAGCCAA
AGTTCAAATAATGGATCATCAAATAATGAATCAAGTANCCAAGGTTCAAACAATGAATCA
AGTAGCCATGGCTCAAACAATGAATCAAGCAGCAAAGGTTCAAACAATGAATCAAGTAGC
CATGGTTCAAACAATGAATCAAGTAGCCAAGGTTCAAATAATGAATCATCCAACAATGAA
TCAAGCAACCAAAATTCAAACAATGAATCATCAAATAATGAATCTAGCAGCAAGGGTTCA
AATAATGAATCGTCAAATAATGAATCAAGCAGCCAGGGTTCAAATAATGAATCATCAAAT
AACGAATCTAACAACCAAAATTCAAACAATGAATCATCACATAAAGAAGAAAGTGAATCA
AACAGTCATCAAAGTTCAGAAACTGAATCCAAAGATCAAGTTTCAAATAGTGGATCAATG
AATCAAAGTAGTGAGTCAAGTGAATCATCGTCTTTATCAGAACAAAGCTCTGCTTTTGAA
TCTTCGTCATCATCGAGTGGTAATTCTCAATCAAAATCAAGTGAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
yii*iiiciylflnneklffynffli*KGPYIISKNYFLNKLKKK---

---NNESSXQGFQIMDHPNNESK**iie*rik*prfnq*iiqimnhrimnpssqssnngs
snnessxqgsnnessshgsnnessskgsnnessshgsnnesssqgsnnessnnessnqns
nnessnnessskgsnnessnnesssqgsnnessnnesnnqnsnnesshkeesesnshqss
eteskdqvsnsgsmnqssessessslseqssafessssssgnsqsksse
Translated Amino Acid sequence (All Frames) 
Frame A:
iilfk*lyvyicf*imknyffiiff*ykkdlilflkiif*in*kk---

---NNESSXQGFQIMDHPNNESK**iie*rik*prfnq*iiqimnhrimnpssqssnngs
snnessxqgsnnessshgsnnessskgsnnessshgsnnesssqgsnnessnnessnqns
nnessnnessskgsnnessnnesssqgsnnessnnesnnqnsnnesshkeesesnshqss
eteskdqvsnsgsmnqssessessslseqssafessssssgnsqsksse

Frame B:
lyylnnymyifvfk**kiifl*fffnikrtlyyf*klffk*ikkk---

---imnqaxkxsk*wiiqimnpnnessnnesssqgstnessk**iie**iqvakvqimdh
qimnqvxkvqtmnqvamaqtmnqaakvqtmnqvamvqtmnqvakvqimnhptmnqatkiq
tmnhqimnlaarvqimnrqimnqaarvqimnhqitnlttkiqtmnhhikkkvnqtvikvq
klnpkikfqivdq*ikvvsqvnhrlyqnkalllnlrhhrvvilnqnqvk

Frame C:
yii*iiiciylflnneklffynffli*KGPYIISKNYFLNKLKKK---

---**ikxprxpnngssk**iqimnhritnqvakvqpmnhpnnessnnesk*pkfk*wii
k**ikxprfkq*ik*pwlkq*ikqqrfkq*ik*pwfkq*ik*prfk**iiqq*ikqpkfk
q*iik**i*qqgfk**ivk**ikqpgfk**iik*ri*qpkfkq*iit*rrk*ikqsskfr
n*iqrssfk*winesk**vk*iivfirtklcf*ifviiew*fsikik*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF413 (SHF413Q) /CSM/SH/SHF4-A/SHF413Q.Seq.d/                       1330   0.0
SHD462 (SHD462Q) /CSM/SH/SHD4-C/SHD462Q.Seq.d/                       1237   0.0
CHO581 (CHO581Q) /CSM/CH/CHO5-D/CHO581Q.Seq.d/                       1199   0.0
CHN835 (CHN835Q) /CSM/CH/CHN8-B/CHN835Q.Seq.d/                       1187   0.0
SHF282 (SHF282Q) /CSM/SH/SHF2-D/SHF282Q.Seq.d/                       1162   0.0
SHD443 (SHD443Q) /CSM/SH/SHD4-B/SHD443Q.Seq.d/                       1158   0.0
SHC615 (SHC615Q) /CSM/SH/SHC6-A/SHC615Q.Seq.d/                       1144   0.0
SHD101 (SHD101Q) /CSM/SH/SHD1-A/SHD101Q.Seq.d/                       1134   0.0
SHH394 (SHH394Q) /CSM/SH/SHH3-D/SHH394Q.Seq.d/                        928   0.0
SHB773 (SHB773Q) /CSM/SH/SHB7-D/SHB773Q.Seq.d/                        597   e-169
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1061   0.0    4
CR847515|CR847515.10 Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9.    34   3e-07  4
AC179327|AC179327.1 Strongylocentrotus purpuratus clone R3-57F4, WORKING DRAFT SEQUENCE, 40 unordered pieces.    32   0.010  3
AC180650|AC180650.1 Strongylocentrotus purpuratus clone R3-3090E7, WORKING DRAFT SEQUENCE, 22 unordered pieces.    32   0.010  3
AC179112|AC179112.1 Strongylocentrotus purpuratus clone R3-1107N9, WORKING DRAFT SEQUENCE, 21 unordered pieces.    32   0.011  3
AC176596|AC176596.1 Strongylocentrotus purpuratus clone R3-114C24, WORKING DRAFT SEQUENCE, 18 unordered pieces.    32   0.011  3
BS000089|BS000089.1 Pan troglodytes chromosome 22 clone:PTB-054B14, map 22, complete sequences.    40   0.017  4
AC171130|AC171130.1 Helobdella robusta clone CH306-1A12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   0.018  4
AG479793|AG479793.1 Mus musculus molossinus DNA, clone:MSMg01-373N19.TJ, genomic survey sequence.    30   0.023  5
AC096295|AC096295.7 Rattus norvegicus clone CH230-37D6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    50   0.081  1
dna update 2006. 3.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382401_35(CR382401|pid:none) Plasmodium falciparum chromosome ...    47   7e-04
AB243100_1(AB243100|pid:none) Entamoeba histolytica SREHP gene f...    45   0.002
AE014187_629(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.002
A32126_1(A32126|pid:none) DNA encoding anti-P.falciparum antigen...    41   0.039
AE014187_372(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.039
X53024_1(X53024|pid:none) P.falciparum DNA for erythrocyte membr...    41   0.039
AL445564_163(AL445564|pid:none) Mycoplasma pulmonis (strain UAB ...    40   0.067
AL844508_256(AL844508|pid:none) Plasmodium falciparum strain 3D7...    40   0.067
BA000043_316(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...    40   0.11
AL035476_45(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    39   0.20
protein update 2009. 4.18
PSORT 

 psg: 0.56  gvh: 0.10  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SHF413 is nuc
5' end seq. ID SHF413F
5' end seq. 
>SHF413F.Seq
ATTATATTATTTAAATAATTATATGTATATATTTGTTTTTAAATAATGAAAAATTATTTT
TTTATAATTTTTTTTTAATATAAAAAGGACCTTATATTATTTCTAAAAATTATTTTTTAA
ATAAATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 147
3' end seq. ID SHF413Z
3' end seq. 
>SHF413Z.Seq
NNNNNNNNNNAATAATGAATCAAGCANCCAAGGNTTCCAAATAATGGATCATCCAAATAA
TGAATCCAAATAATGAATCATCGAATAACGAATCAAGTAGCCAAGGTTCAACCAATGAAT
CATCCAAATAATGAATCATCGAATAATGAATCCAAGTAGCCAAAGTTCAAATAATGGATC
ATCAAATAATGAATCAAGTANCCAAGGTTCAAACAATGAATCAAGTAGCCATGGCTCAAA
CAATGAATCAAGCAGCAAAGGTTCAAACAATGAATCAAGTAGCCATGGTTCAAACAATGA
ATCAAGTAGCCAAGGTTCAAATAATGAATCATCCAACAATGAATCAAGCAACCAAAATTC
AAACAATGAATCATCAAATAATGAATCTAGCAGCAAGGGTTCAAATAATGAATCGTCAAA
TAATGAATCAAGCAGCCAGGGTTCAAATAATGAATCATCAAATAACGAATCTAACAACCA
AAATTCAAACAATGAATCATCACATAAAGAAGAAAGTGAATCAAACAGTCATCAAAGTTC
AGAAACTGAATCCAAAGATCAAGTTTCAAATAGTGGATCAATGAATCAAAGTAGTGAGTC
AAGTGAATCATCGTCTTTATCAGAACAAAGCTCTGCTTTTGAATCTTCGTCATCATCGAG
TGGTAATTCTCAATCAAAATCAAGTGAAAA
Length of 3' end seq. 690
Connected seq. ID SHF413P
Connected seq. 
>SHF413P.Seq
ATTATATTATTTAAATAATTATATGTATATATTTGTTTTTAAATAATGAAAAATTATTTT
TTTATAATTTTTTTTTAATATAAAAAGGACCTTATATTATTTCTAAAAATTATTTTTTAA
ATAAATTAAAAAAAAAA----------AATAATGAATCAAGCANCCAAGGNTTCCAAATA
ATGGATCATCCAAATAATGAATCCAAATAATGAATCATCGAATAACGAATCAAGTAGCCA
AGGTTCAACCAATGAATCATCCAAATAATGAATCATCGAATAATGAATCCAAGTAGCCAA
AGTTCAAATAATGGATCATCAAATAATGAATCAAGTANCCAAGGTTCAAACAATGAATCA
AGTAGCCATGGCTCAAACAATGAATCAAGCAGCAAAGGTTCAAACAATGAATCAAGTAGC
CATGGTTCAAACAATGAATCAAGTAGCCAAGGTTCAAATAATGAATCATCCAACAATGAA
TCAAGCAACCAAAATTCAAACAATGAATCATCAAATAATGAATCTAGCAGCAAGGGTTCA
AATAATGAATCGTCAAATAATGAATCAAGCAGCCAGGGTTCAAATAATGAATCATCAAAT
AACGAATCTAACAACCAAAATTCAAACAATGAATCATCACATAAAGAAGAAAGTGAATCA
AACAGTCATCAAAGTTCAGAAACTGAATCCAAAGATCAAGTTTCAAATAGTGGATCAATG
AATCAAAGTAGTGAGTCAAGTGAATCATCGTCTTTATCAGAACAAAGCTCTGCTTTTGAA
TCTTCGTCATCATCGAGTGGTAATTCTCAATCAAAATCAAGTGAAAA
Length of connected seq. 817
Full length Seq ID -
Full length Seq. -
Length of full length seq. -