>SHF406 (SHF406Q) /CSM/SH/SHF4-A/SHF406Q.Seq.d/
XXXXXXXXXXTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCG
AAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCT
TTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCG
ATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTT
TCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTG
CTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATC
CACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTT
GTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGG
ATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAG
ATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAG
TNTNTCATAAAGTTGCTGAACAACAAGTA

---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKD
ALRKIYGWFGKEIPKEATQVXHKVAEQQV

Frame A:
---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKD
ALRKIYGWFGKEIPKEATQVXHKVAEQQV


Frame B:
---kiv*elemnqingifskyslwhfvmvsi**vqplyslqsfmmvlgsmmlsifvs*pi
mnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sllslclklllpllvsmvsvvih
mipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfqwisln*vspifsvvrlnqsikm
hsvksmvglvkksqrkqlkxxikllnnk


Frame C:
---rscks*k*trsmesfrsihygtllwflfsrfnhcilcnhs*wylvp*cyqssylnr*
*tswshlssslylwscnyfrit*srflll*tsr*scnlcfryvsnccylywclwfpwlst
*flfr*srlsstwykfprlwlglgclcldlvfplvhsngfh*irchlyspw*d*tnq*rc
tp*nlwlvw*rnpkgsnssxs*sc*tts

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF406 (SHF406Q) /CSM/SH/SHF4-A/SHF406Q.Seq.d/                       1215   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1211   0.0
VHP530 (VHP530Q) /CSM/VH/VHP5-B/VHP530Q.Seq.d/                       1211   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1211   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1211   0.0
VHL594 (VHL594Q) /CSM/VH/VHL5-D/VHL594Q.Seq.d/                       1211   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1211   0.0
VHI348 (VHI348Q) /CSM/VH/VHI3-B/VHI348Q.Seq.d/                       1211   0.0
VHH560 (VHH560Q) /CSM/VH/VHH5-C/VHH560Q.Seq.d/                       1211   0.0
VHD413 (VHD413Q) /CSM/VH/VHD4-A/VHD413Q.Seq.d/                       1211   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1211   0.0    1
CX538721|CX538721.1 s13dNF0IG03GS020_460694 Germinating Seed Medicago truncatula cDNA, mRNA sequence.    36   0.36   3
CV540351|CV540351.1 POD_031_B09 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence.    32   1.5    3
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   3.7    1
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   3.7    1
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   3.7    1
CK473247|CK473247.1 AGENCOURT_17619315 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128539 5', mRNA sequence.    44   3.7    1
CV116033|CV116033.1 AGENCOURT_31532130 NIH_MGC_269 Rattus norvegicus cDNA clone IMAGE:7458092 5', mRNA sequence.    44   3.7    1
CF108319|CF108319.1 Shultzomica01570 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig1237 5', mRNA sequence.    44   3.7    1
CB788513|CB788513.1 AMGNNUC:MRPE3-00057-A10-A placenta embryo D17 (10379) Rattus norvegicus cDNA clone mrpe3-00057-a10 5', mRNA sequence.    44   3.7    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   435   e-121
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   435   e-121
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   137   3e-31
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   133   3e-30
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   133   3e-30
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   133   5e-30
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   132   8e-30
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   132   8e-30
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   132   1e-29
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   132   1e-29

 psg: 0.73  gvh: 0.51  alm: 0.25  top: 0.53  tms: 0.27  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for SHF406 is end

>SHF406Z.Seq
NNNNNNNNNNTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCG
AAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCT
TTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCG
ATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTT
TCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTG
CTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATC
CACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTT
GTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGG
ATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAG
ATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAG
TNTNTCATAAAGTTGCTGAACAACAAGTA