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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF403
Library SH
(Link to library)
Clone ID SHF403
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16595-1
Original site URL
Representative seq. ID SHF403P
(Link to Original site)
Representative DNA sequence 
>SHF403 (SHF403Q) /CSM/SH/SHF4-A/SHF403Q.Seq.d/
AGATAGACCNCNTAANCAACAAANAGTTGAAAATGGAAAACAAATGACNCCAACAAAGCA
ACNCCAACAACAACAACAACAACAACCAATTTCAAATGGTANATTAAAAAAATTAAAAGC
TCANTCAAGTGATGAAAANAGNGGTTCAAGTGAANATGATGATGAANATGTTGAGGATGT
GGATTCATCTGGAAGTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGA
TGATGATGATGATGGTANCXXXXXXXXXXTTTGTGAACGTATTGAAATACCAACCAATGA
AACCAATACAACACTCACCAATAAAATCATTCAATATACAAAACAACTAGAGAAAGAGTC
CAGAGGTAAACGTTCAAGAACTGAAGCTTTGAAACTTTTCCAAGACGCAAATAATTCCCT
CAAGGAGATTTCAGAGCAACGTGATAACATTGAAGAATTGGCAACCATATTGGAAAGAAA
TTTGAATGAACGTTATAAGAAATGGCAACGTTTCCGTCTTTCAATCTCTCGTAGATCCGA
TCAATACTTTAATATTTTCTTATCAAAGAAAGGTTACACTGGTTCGTTGACTTTTGATCA
TCAAAATGGTAAATTGGATATCAATGTCGAACTTCAAAAAGCTTTGCCTTCCAATCAAAA
TGGTACTGCCAAAGGTGATACCAAAGGTTTGTCTGGTGGTGAACGTTCTTTCTCAACTGT
ATCATTATTATTGGCCTTCTGGGAGAATATGGAATGTCCTTTCCGTGCAATGGATGAATT
CGATGTTTTCATGGATGAAGTAAATCGTTCAATCTCTATCAATCTTTTAATGTCAAAAGC
TGAAGAAAATAGATCAAAACAATATATTTTCGT
sequence update 2002.10.25
Translated Amino Acid sequence 
DRPXXQQXVENGKQMTPTKQXQQQQQQQPISNGXLKKLKAXSSDEXXGSSEXDDEXVEDV
DSSGSDXGSSDDDDDDDDDDDDDDGX---

---CERIEIPTNETNTTLTNKIIQYTKQLEKESRGKRSRTEALKLFQDANNSLKEISEQR
DNIEELATILERNLNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDI
NVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFMDEV
NRSISINLLMSKAEENRSKQYIF
Translated Amino Acid sequence (All Frames) 
Frame A:
r*tx*xtxs*kwktndxnkatptttttttnfkwxikkikssxk**kxxfk*x***xc*gc
gfiwk**x****************wx---

---fvnvlkyqpmkpiqhspiksfniqnn*rkspevnvqelkl*nfsktqiipsrrfqsn
vitlknwqpywkei*mnvirngnvsvfqslvdpintlifsyqrkvtlvr*lliikmvnwi
smsnfkklclpikmvlpkvipkvclvvnvlsqlyhyywpsgriwnvlsvqwmnsmfswmk
*ivqslsif*cqklkkidqnnifs

Frame B:
DRPXXQQXVENGKQMTPTKQXQQQQQQQPISNGXLKKLKAXSSDEXXGSSEXDDEXVEDV
DSSGSDXGSSDDDDDDDDDDDDDDGX---

---l*ty*ntnq*nqynthq*nhsiykttrervqr*tfkn*sfetfprrk*fpqgdfrat
**h*rignhigkkfe*tl*ematfpsfnls*irsil*yflikerlhwfvdf*sskw*igy
qcrtsksfafqskwycqr*yqrfvww*tfflnciiiigllgeygmsfpcng*ircfhg*s
ksfnlyqsfnvks*rk*iktiyfr

Frame C:
idxxxnkxlkmenk*xqqsnxnnnnnnnqfqmvx*kn*klxqvmkxxvqvxmmmxmlrmw
ihlevixvvvmmmmmmmmmmmmmmv---

---CERIEIPTNETNTTLTNKIIQYTKQLEKESRGKRSRTEALKLFQDANNSLKEISEQR
DNIEELATILERNLNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDI
NVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFMDEV
NRSISINLLMSKAEENRSKQYIF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF403 (SHF403Q) /CSM/SH/SHF4-A/SHF403Q.Seq.d/                       1197   0.0
SHB404 (SHB404Q) /CSM/SH/SHB4-A/SHB404Q.Seq.d/                       1197   0.0
AHO875 (AHO875Q) /CSM/AH/AHO8-D/AHO875Q.Seq.d/                       1197   0.0
AHL517 (AHL517Q) /CSM/AH/AHL5-A/AHL517Q.Seq.d/                       1197   0.0
AHI559 (AHI559Q) /CSM/AH/AHI5-C/AHI559Q.Seq.d/                       1197   0.0
AHI294 (AHI294Q) /CSM/AH/AHI2-D/AHI294Q.Seq.d/                       1197   0.0
AHA315 (AHA315Q) /CSM/AH/AHA3-A/AHA315Q.Seq.d/                       1197   0.0
AHC779 (AHC779Q) /CSM/AH/AHC7-D/AHC779Q.Seq.d/                       1183   0.0
AHL502 (AHL502Q) /CSM/AH/AHL5-A/AHL502Q.Seq.d/                       1176   0.0
SHK485 (SHK485Q) /CSM/SH/SHK4-D/SHK485Q.Seq.d/                       1172   0.0
own update 2003.10. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI543584|BI543584.1 FS1_E12 Sugar Beet inflorescence cDNA library (subtracted) Betasequence.    56   0.001  1
CV190095|CV190095.1 vco01-3ms1-h11 Vco01 Vaccinium corymbosum cDNA clone vco01-3ms1-h11 5', mRNA sequence.    50   0.085  1
CO978855|CO978855.1 GM89003A1B05.r1 Gm-r1089 Glycine max cDNA clone Gm-r1089-825 3, mRNA sequence.    50   0.085  1
CR382133|CR382133.1 Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii.    50   0.085  1
CR380954|CR380954.1 Candida glabrata strain CBS138 chromosome H complete sequence.    48   0.34   1
AC182812|AC182812.1 Gasterosteus aculeatus clone VMRC28-91C14, complete sequence.    48   0.34   1
BX649446|BX649446.6 Zebrafish DNA sequence from clone DKEY-247M22 in linkage group 4.    42   0.62   2
BX649409|BX649409.3 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  RP71-44A12.    42   0.80   2
BH769558|BH769558.1 BMBAC366E03SP6_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence.    36   0.81   2
AC180943|AC180943.1 Strongylocentrotus purpuratus clone R3-3026J13, WORKING DRAFT SEQUENCE, 11 unordered pieces.    42   0.92   2
dna update 2006. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6P9I7) RecName: Full=Structural maintenance of chromosomes pro...   137   6e-31
AK014442_1(AK014442|pid:none) Mus musculus 18 days pregnant adul...   135   2e-30
AK025769_1(AK025769|pid:none) Homo sapiens cDNA: FLJ22116 fis, c...   133   6e-30
AJ310551_1(AJ310551|pid:none) Homo sapiens mRNA for SMC6 protein.     132   2e-29
(Q96SB8) RecName: Full=Structural maintenance of chromosomes pro...   132   2e-29
BX088700_44(BX088700|pid:none) DNA centromeric region sequence f...   124   3e-27
(P53692) RecName: Full=Structural maintenance of chromosomes pro...   124   3e-27
AK003872_1(AK003872|pid:none) Mus musculus 18-day embryo whole b...   124   4e-27
AM270257_15(AM270257|pid:none) Aspergillus niger contig An11c040...   117   5e-25
AM920435_850(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   112   2e-23
protein update 2009. 4.18
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHF403 is nuc
5' end seq. ID SHF403F
5' end seq. 
>SHF403F.Seq
AGATAGACCNCNTAANCAACAAANAGTTGAAAATGGAAAACAAATGACNCCAACAAAGCA
ACNCCAACAACAACAACAACAACAACCAATTTCAAATGGTANATTAAAAAAATTAAAAGC
TCANTCAAGTGATGAAAANAGNGGTTCAAGTGAANATGATGATGAANATGTTGAGGATGT
GGATTCATCTGGAAGTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGA
TGATGATGATGATGGTANCNNNNNNNNNN
Length of 5' end seq. 269
3' end seq. ID SHF403Z
3' end seq. 
>SHF403Z.Seq
NNNNNNNNNNTTTGTGAACGTATTGAAATACCAACCAATGAAACCAATACAACACTCACC
AATAAAATCATTCAATATACAAAACAACTAGAGAAAGAGTCCAGAGGTAAACGTTCAAGA
ACTGAAGCTTTGAAACTTTTCCAAGACGCAAATAATTCCCTCAAGGAGATTTCAGAGCAA
CGTGATAACATTGAAGAATTGGCAACCATATTGGAAAGAAATTTGAATGAACGTTATAAG
AAATGGCAACGTTTCCGTCTTTCAATCTCTCGTAGATCCGATCAATACTTTAATATTTTC
TTATCAAAGAAAGGTTACACTGGTTCGTTGACTTTTGATCATCAAAATGGTAAATTGGAT
ATCAATGTCGAACTTCAAAAAGCTTTGCCTTCCAATCAAAATGGTACTGCCAAAGGTGAT
ACCAAAGGTTTGTCTGGTGGTGAACGTTCTTTCTCAACTGTATCATTATTATTGGCCTTC
TGGGAGAATATGGAATGTCCTTTCCGTGCAATGGATGAATTCGATGTTTTCATGGATGAA
GTAAATCGTTCAATCTCTATCAATCTTTTAATGTCAAAAGCTGAAGAAAATAGATCAAAA
CAATATATTTTCGT
Length of 3' end seq. 614
Connected seq. ID SHF403P
Connected seq. 
>SHF403P.Seq
AGATAGACCNCNTAANCAACAAANAGTTGAAAATGGAAAACAAATGACNCCAACAAAGCA
ACNCCAACAACAACAACAACAACAACCAATTTCAAATGGTANATTAAAAAAATTAAAAGC
TCANTCAAGTGATGAAAANAGNGGTTCAAGTGAANATGATGATGAANATGTTGAGGATGT
GGATTCATCTGGAAGTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGA
TGATGATGATGATGGTANC----------TTTGTGAACGTATTGAAATACCAACCAATGA
AACCAATACAACACTCACCAATAAAATCATTCAATATACAAAACAACTAGAGAAAGAGTC
CAGAGGTAAACGTTCAAGAACTGAAGCTTTGAAACTTTTCCAAGACGCAAATAATTCCCT
CAAGGAGATTTCAGAGCAACGTGATAACATTGAAGAATTGGCAACCATATTGGAAAGAAA
TTTGAATGAACGTTATAAGAAATGGCAACGTTTCCGTCTTTCAATCTCTCGTAGATCCGA
TCAATACTTTAATATTTTCTTATCAAAGAAAGGTTACACTGGTTCGTTGACTTTTGATCA
TCAAAATGGTAAATTGGATATCAATGTCGAACTTCAAAAAGCTTTGCCTTCCAATCAAAA
TGGTACTGCCAAAGGTGATACCAAAGGTTTGTCTGGTGGTGAACGTTCTTTCTCAACTGT
ATCATTATTATTGGCCTTCTGGGAGAATATGGAATGTCCTTTCCGTGCAATGGATGAATT
CGATGTTTTCATGGATGAAGTAAATCGTTCAATCTCTATCAATCTTTTAATGTCAAAAGC
TGAAGAAAATAGATCAAAACAATATATTTTCGT
Length of connected seq. 863
Full length Seq ID -
Full length Seq. -
Length of full length seq. -