>SHF401 (SHF401Q) /CSM/SH/SHF4-A/SHF401Q.Seq.d/
TTTTATATATGTTATAAATTAAATGAATTTAAAATTTTCATTTTTTTTAATAGTTTTTAC
TATTGTGCCAATATTTTGTCAAACATTTTTTCCAAAAGGATTTAGAAATACAGAAAATTC
AATTACATTTGATTGGGATTTAAATGATCCAAATTATTATACAAAATGGGAAATAACAAA
AGCAGATGGTAATATAACTGAAATGAGTTTTCAATGTACGAATAATGCAACAATAAAAAG
CTGTACATATACAAATAATGGAACACCACCAATGAATGAATTATATGGTATAAGTGGTAT
GCCATGTTATATGGATGGCAGTAGTACTGAAAAATGTCAAGGAATATTACAACCATCACA
TTATCCAACACCAATTATAAACTCAACAATACCTTCAATTCCAGTAGATGGTACATCAAT
AACATTGGTTGGTTCATTTATTATATTTATAGTTGGTAATGATTCAAATTATTTTCAACT
TTCAAGTGGTGGTATAGCAAATTTCAATTCACCAATTCATTTGGATCCAACTCAAATGAT
TATAAATATTCCATCAGGTTGTGGTCAAGATTCAATTAAATGGCCAAGTGGATCAAXXXX
XXXXXXTTTCCAAATGTTGCTGAAGGATTTCATAATAACAGTCCAAATGATGCTGTAATT
GTAAATGGTAAATTCTTTGCATCAAGTGGTGTAGTATCAATCGAATGTGGGAATAAGACA
TTCCNTAAATGTAATTTAATTGATTATAAAACCATCTCTTGCCCAGTTCAATTAGATGGA
CCTTATGATCAATTTTGTACACTCACTTTTGAAAATAAAACCAATATACCAGTTTATGTT
TCATTTCAACAACCAATAGCATTGGCTTCAAATTCTTTATATTTAGATGGTGGTGAATTG
GTTATTTTTGGTGATTGTTTTTATGATATAATCGATAATATTCATATTGGTCCTGTTCAA
TGTATTGATAGTAAATTCATATCTTCAAATGCAATCGCATGTACACTACCACCCACCGCA
GACAAACATCTATTGAATCAAATAATGTTTATAAATATTACTATTGCTGGTAAAAGTGGT
GGTGGATATGCTTTTTCCTATTTAACTCCATGGATTCAATTCGACTCAACCTCCCCTACT
GCAGATTCAATGATTATCATTACCACTATAATAATTGCATTTGCAATCGGCTCAATTTAT
ATTCATTTCGCTATTCTATTTCATAAAAAGAAAAATATTAAAAGAGTTTTACCTTCAGGT
GCTCCAAAACAAGTTGACCAACGAAGACAATTAACTCGTCAATTAACTCAACCACAATTT
ATAATACCACAACAAACATCATCCTCAAGNATCAAATTCAA

fiyvin*MNLKFSFFLIVFTIVPIFCQTFFPKGFRNTENSITFDWDLNDPNYYTKWEITK
ADGNITEMSFQCTNNATIKSCTYTNNGTPPMNELYGISGMPCYMDGSSTEKCQGILQPSH
YPTPIINSTIPSIPVDGTSITLVGSFIIFIVGNDSNYFQLSSGGIANFNSPIHLDPTQMI
INIPSGCGQDSIKWPSGS---

---FPNVAEGFHNNSPNDAVIVNGKFFASSGVVSIECGNKTFXKCNLIDYKTISCPVQLD
GPYDQFCTLTFENKTNIPVYVSFQQPIALASNSLYLDGGELVIFGDCFYDIIDNIHIGPV
QCIDSKFISSNAIACTLPPTADKHLLNQIMFINITIAGKSGGGYAFSYLTPWIQFDSTSP
TADSMIIITTIIIAFAIGSIYIHFAILFHKKKNIKRVLPSGAPKQVDQRRQLTRQLTQPQ
FIIPQQTSSSXIKF

Frame A:
fyicyklnefkififfnsfyycanilsnifskri*kyrkfnyi*lgfk*skllykmgnnk
srw*yn*nefsmye*cnnkklyiyk*wnttne*iiwykwyamlygwq*y*kmsrnittit
lsntnyklnntfnssrwyinnigwfiyyiysw**fklfstfkwwyskfqftnsfgsnsnd
ykysirlwsrfn*makwi---

---FPNVAEGFHNNSPNDAVIVNGKFFASSGVVSIECGNKTFXKCNLIDYKTISCPVQLD
GPYDQFCTLTFENKTNIPVYVSFQQPIALASNSLYLDGGELVIFGDCFYDIIDNIHIGPV
QCIDSKFISSNAIACTLPPTADKHLLNQIMFINITIAGKSGGGYAFSYLTPWIQFDSTSP
TADSMIIITTIIIAFAIGSIYIHFAILFHKKKNIKRVLPSGAPKQVDQRRQLTRQLTQPQ
FIIPQQTSSSXIKF

Frame B:
fiyvin*MNLKFSFFLIVFTIVPIFCQTFFPKGFRNTENSITFDWDLNDPNYYTKWEITK
ADGNITEMSFQCTNNATIKSCTYTNNGTPPMNELYGISGMPCYMDGSSTEKCQGILQPSH
YPTPIINSTIPSIPVDGTSITLVGSFIIFIVGNDSNYFQLSSGGIANFNSPIHLDPTQMI
INIPSGCGQDSIKWPSGS---

---fqmllkdfiitvqmml*l*mvnslhqvv*yqsnvgirhsxnvi*liikpslaqfn*m
dlminfvhsllkikpiyqfmfhfnnq*hwlqilyi*mvvnwlflvivfmi*siifilvlf
nvlivnsylqmqshvhyhppqtniy*ik*cl*illllvkvvvdmlfpi*lhgfnstqppl
lqiq*lslpl**lhlqsaqfifislfyfikrkilkefylqvlqnkltnedn*lvn*lnhn
l*yhnkhhpqxsns

Frame C:
lyml*ik*i*nfhff**flllcqyfvkhffqkdleiqkiqlhligi*miqiiiqngk*qk
qmvi*lk*vfnvrimqq*kavhiqimehhq*mnymv*vvchviwmavvlknvkeyynhhi
iqhql*tqqylqfq*mvhq*hwlvhllyl*lvmiqiifnfqvvv*qisihqfiwiqlk*l
*ifhqvvvkiqlngqvdq---

---skcc*ris**qsk*ccnckw*ilcikwcsinrmwe*dip*m*fn*l*nhllpssirw
tl*silythf*k*nqytslcfisttnsigfkffifrww*igyfw*lfl*ynr*ysywscs
my***ihifkcnrmyttthrrqtsiesnnvykyyycw*kwwwicfflfnsmdsirlnlpy
crfndyhyhynncicnrlnlysfrysis*keky*ksftfrcskts*ptktinssinstti
yntttniilkxqiq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF401 (SHF401Q) /CSM/SH/SHF4-A/SHF401Q.Seq.d/                       2579   0.0
CHR524 (CHR524Q) /CSM/CH/CHR5-A/CHR524Q.Seq.d/                       1477   0.0
CHI460 (CHI460Q) /CSM/CH/CHI4-C/CHI460Q.Seq.d/                       1477   0.0
CHG851 (CHG851Q) /CSM/CH/CHG8-C/CHG851Q.Seq.d/                       1477   0.0
AHO706 (AHO706Q) /CSM/AH/AHO7-A/AHO706Q.Seq.d/                       1477   0.0
AHQ767 (AHQ767Q) /CSM/AH/AHQ7-C/AHQ767Q.Seq.d/                       1469   0.0
AHO333 (AHO333Q) /CSM/AH/AHO3-B/AHO333Q.Seq.d/                       1469   0.0
AHD113 (AHD113Q) /CSM/AH/AHD1-A/AHD113Q.Seq.d/                       1469   0.0
AHF450 (AHF450Q) /CSM/AH/AHF4-C/AHF450Q.Seq.d/                       1463   0.0
SHF882 (SHF882Q) /CSM/SH/SHF8-D/SHF882Q.Seq.d/                       1461   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.  1459   0.0    1
AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.    60   2e-11  6
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    38   6e-04  11
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   0.015  11
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   0.019  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.031  21
CX617210|CX617210.1 GABR1_32_H10.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_32_H10_A002 3', mRNA sequence.    52   0.034  1
CN143252|CN143252.1 WOUND1_15_C04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_15_C04_A002 3', mRNA sequence.    52   0.034  1
CN142951|CN142951.1 WOUND1_13_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_13_G01_A002 3', mRNA sequence.    52   0.034  1
CN133792|CN133792.1 OX1_18_H03.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_18_H03_A002 3', mRNA sequence.    52   0.034  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...   437   e-121
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...   100   2e-19
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    82   6e-14
AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    37   1.6
AL844509_76(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    37   1.6
M85149_1(M85149|pid:none) Caenorhabditis elegans zinc finger pro...    35   4.6
(Q9TN87) RecName: Full=Maturase K; AltName: Full=Intron maturase...    35   7.8

 psg: 1.00  gvh: 0.60  alm: 0.21  top: 0.33  tms: 0.20  mit: 0.31  mip: 0.06
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SHF401 is end

>SHF401F.Seq
TTTTATATATGTTATAAATTAAATGAATTTAAAATTTTCATTTTTTTTAATAGTTTTTAC
TATTGTGCCAATATTTTGTCAAACATTTTTTCCAAAAGGATTTAGAAATACAGAAAATTC
AATTACATTTGATTGGGATTTAAATGATCCAAATTATTATACAAAATGGGAAATAACAAA
AGCAGATGGTAATATAACTGAAATGAGTTTTCAATGTACGAATAATGCAACAATAAAAAG
CTGTACATATACAAATAATGGAACACCACCAATGAATGAATTATATGGTATAAGTGGTAT
GCCATGTTATATGGATGGCAGTAGTACTGAAAAATGTCAAGGAATATTACAACCATCACA
TTATCCAACACCAATTATAAACTCAACAATACCTTCAATTCCAGTAGATGGTACATCAAT
AACATTGGTTGGTTCATTTATTATATTTATAGTTGGTAATGATTCAAATTATTTTCAACT
TTCAAGTGGTGGTATAGCAAATTTCAATTCACCAATTCATTTGGATCCAACTCAAATGAT
TATAAATATTCCATCAGGTTGTGGTCAAGATTCAATTAAATGGCCAAGTGGATCAANNNN
NNNNNN

>SHF401Z.Seq
NNNNNNNNNNTTTCCAAATGTTGCTGAAGGATTTCATAATAACAGTCCAAATGATGCTGT
AATTGTAAATGGTAAATTCTTTGCATCAAGTGGTGTAGTATCAATCGAATGTGGGAATAA
GACATTCCNTAAATGTAATTTAATTGATTATAAAACCATCTCTTGCCCAGTTCAATTAGA
TGGACCTTATGATCAATTTTGTACACTCACTTTTGAAAATAAAACCAATATACCAGTTTA
TGTTTCATTTCAACAACCAATAGCATTGGCTTCAAATTCTTTATATTTAGATGGTGGTGA
ATTGGTTATTTTTGGTGATTGTTTTTATGATATAATCGATAATATTCATATTGGTCCTGT
TCAATGTATTGATAGTAAATTCATATCTTCAAATGCAATCGCATGTACACTACCACCCAC
CGCAGACAAACATCTATTGAATCAAATAATGTTTATAAATATTACTATTGCTGGTAAAAG
TGGTGGTGGATATGCTTTTTCCTATTTAACTCCATGGATTCAATTCGACTCAACCTCCCC
TACTGCAGATTCAATGATTATCATTACCACTATAATAATTGCATTTGCAATCGGCTCAAT
TTATATTCATTTCGCTATTCTATTTCATAAAAAGAAAAATATTAAAAGAGTTTTACCTTC
AGGTGCTCCAAAACAAGTTGACCAACGAAGACAATTAACTCGTCAATTAACTCAACCACA
ATTTATAATACCACAACAAACATCATCCTCAAGNATCAAATTCAA

>SHF401P.Seq
TTTTATATATGTTATAAATTAAATGAATTTAAAATTTTCATTTTTTTTAATAGTTTTTAC
TATTGTGCCAATATTTTGTCAAACATTTTTTCCAAAAGGATTTAGAAATACAGAAAATTC
AATTACATTTGATTGGGATTTAAATGATCCAAATTATTATACAAAATGGGAAATAACAAA
AGCAGATGGTAATATAACTGAAATGAGTTTTCAATGTACGAATAATGCAACAATAAAAAG
CTGTACATATACAAATAATGGAACACCACCAATGAATGAATTATATGGTATAAGTGGTAT
GCCATGTTATATGGATGGCAGTAGTACTGAAAAATGTCAAGGAATATTACAACCATCACA
TTATCCAACACCAATTATAAACTCAACAATACCTTCAATTCCAGTAGATGGTACATCAAT
AACATTGGTTGGTTCATTTATTATATTTATAGTTGGTAATGATTCAAATTATTTTCAACT
TTCAAGTGGTGGTATAGCAAATTTCAATTCACCAATTCATTTGGATCCAACTCAAATGAT
TATAAATATTCCATCAGGTTGTGGTCAAGATTCAATTAAATGGCCAAGTGGATCAA----
------TTTCCAAATGTTGCTGAAGGATTTCATAATAACAGTCCAAATGATGCTGTAATT
GTAAATGGTAAATTCTTTGCATCAAGTGGTGTAGTATCAATCGAATGTGGGAATAAGACA
TTCCNTAAATGTAATTTAATTGATTATAAAACCATCTCTTGCCCAGTTCAATTAGATGGA
CCTTATGATCAATTTTGTACACTCACTTTTGAAAATAAAACCAATATACCAGTTTATGTT
TCATTTCAACAACCAATAGCATTGGCTTCAAATTCTTTATATTTAGATGGTGGTGAATTG
GTTATTTTTGGTGATTGTTTTTATGATATAATCGATAATATTCATATTGGTCCTGTTCAA
TGTATTGATAGTAAATTCATATCTTCAAATGCAATCGCATGTACACTACCACCCACCGCA
GACAAACATCTATTGAATCAAATAATGTTTATAAATATTACTATTGCTGGTAAAAGTGGT
GGTGGATATGCTTTTTCCTATTTAACTCCATGGATTCAATTCGACTCAACCTCCCCTACT
GCAGATTCAATGATTATCATTACCACTATAATAATTGCATTTGCAATCGGCTCAATTTAT
ATTCATTTCGCTATTCTATTTCATAAAAAGAAAAATATTAAAAGAGTTTTACCTTCAGGT
GCTCCAAAACAAGTTGACCAACGAAGACAATTAACTCGTCAATTAACTCAACCACAATTT
ATAATACCACAACAAACATCATCCTCAAGNATCAAATTCAA