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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF333
Library SH
(Link to library)
Clone ID SHF333
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHF333P
(Link to Original site)
Representative DNA sequence 
>SHF333 (SHF333Q) /CSM/SH/SHF3-B/SHF333Q.Seq.d/
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTNCACCATTTACTGGTAGTGXXXXXXX
XXXGCCGNAGTTGATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAAT
TTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAA
GGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCA
ATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACC
TCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATT
ACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATA
AATGGTAATGGTATTCAAGATGCTGGTGAACNTGGTATTTCAGGAATCACAGTATTCTTA
ATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTC
AAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAA
GCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGAT
GCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGT
GGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAATAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
lyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLD
SNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTN
PKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSIL
TVRISVDLGYVEQTQPPTQPPTQPPTQPPTPXPFTGS---

---AXVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFE
GSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWL
DINGNGIQDAGEXGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAF
FQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nn
kki*inkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfr
fk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyq
skrlll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliyt
ys*n*c*fglc*ansttnsttysttysttntxtiyw*---

---AXVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFE
GSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWL
DINGNGIQDAGEXGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAF
FQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nn
kki*inkk

Frame B:
lyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLD
SNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTN
PKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSIL
TVRISVDLGYVEQTQPPTQPPTQPPTQPPTPXPFTGS---

---pxliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvilllqlvsitmkhlk
vqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhnivlvefgl
i*mvmvfkmlvnxvfqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhs
sklvlplq*emliqliqiqivmlsyqllimfmsllllllmlvviilmvvhlvlfqknkii
kkyk*ik

Frame C:
ci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*i
qikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpi
qkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlyl
qlelvliwvmlsklnhqlnhllnhllnhqhlhhllvv---

---rs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yycynwfrll*si*r
fnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*
ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfklllcnsccil
pswffhynekc*snsskyk**cflinc**clchffyff*cwwllf*wlfiwyyskkik**
knink*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                       1366   0.0
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/                       1366   0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                       1366   0.0
SHL785 (SHL785Q) /CSM/SH/SHL7-D/SHL785Q.Seq.d/                       1366   0.0
SHL586 (SHL586Q) /CSM/SH/SHL5-D/SHL586Q.Seq.d/                       1366   0.0
SHL547 (SHL547Q) /CSM/SH/SHL5-B/SHL547Q.Seq.d/                       1366   0.0
SHL461 (SHL461Q) /CSM/SH/SHL4-C/SHL461Q.Seq.d/                       1366   0.0
SHL393 (SHL393Q) /CSM/SH/SHL3-D/SHL393Q.Seq.d/                       1366   0.0
SHL303 (SHL303Q) /CSM/SH/SHL3-A/SHL303Q.Seq.d/                       1366   0.0
SHK883 (SHK883Q) /CSM/SH/SHK8-D/SHK883Q.Seq.d/                       1366   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   1.1    2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   1.1    2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   1.1    2
CR809814|CR809814.1 GR0AAA33AC07FM1 INRA BAC Bos taurus genomic clone INRAb_567G12, DNA sequence.    32   1.8    3
CC537154|CC537154.1 CH240_416F9.T7 CHORI-240 Bos taurus genomic clone CH240_416F9, genomic survey sequence.    32   1.8    3
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence.    46   2.1    1
BB047825|BB047825.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430562L22, 3' end partial sequence.    46   2.1    1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    46   2.1    1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   2.1    1
BH078802|BH078802.1 RPCI-24-244F17.TV RPCI-24 Mus musculus genomic clone RPCI-24-244F17 , DNA sequence.    46   2.1    1
dna update 2006. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    73   2e-11
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   5e-07
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    56   3e-06
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   3e-05
protein update 2009. 4.18
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for SHF333 is end
5' end seq. ID SHF333F
5' end seq. 
>SHF333F.Seq
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTNCACCATTTACTGGTAGTGNNNNNNN
NNN
Length of 5' end seq. 663
3' end seq. ID SHF333Z
3' end seq. 
>SHF333Z.Seq
NNNNNNNNNNGCCGNAGTTGATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAA
TGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGC
AACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGA
AGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATA
TATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGG
TGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCT
TGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACNTGGTATTTCAGGAATCACAGT
ATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGG
TTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATT
CTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAA
TAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGA
TGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAA
TAAAAAAATATAAATAAATAAAAAA
Length of 3' end seq. 745
Connected seq. ID SHF333P
Connected seq. 
>SHF333P.Seq
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTNCACCATTTACTGGTAGTG-------
---GCCGNAGTTGATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAAT
TTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAA
GGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCA
ATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACC
TCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATT
ACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATA
AATGGTAATGGTATTCAAGATGCTGGTGAACNTGGTATTTCAGGAATCACAGTATTCTTA
ATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTC
AAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAA
GCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGAT
GCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGT
GGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAATAAAAAA
Length of connected seq. 1388
Full length Seq ID -
Full length Seq. -
Length of full length seq. -