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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF328
Library SH
(Link to library)
Clone ID SHF328
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHF328E
(Link to Original site)
Representative DNA sequence 
>SHF328 (SHF328Q) /CSM/SH/SHF3-B/SHF328Q.Seq.d/
ATAAATNAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCT
TCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAA
TAAAGCAGTTCAAGAGGCTGAAAAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGC
TGTANACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAA
TGAACAAGATGCCATTGAACAAGCTCAACATTTACANCGTATTGAAAATGGTGAAGATAT
CGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGC
TGCTAAATTACAAAATGAAATGGACCACATTAGAACTCTTACTTGAAGAGAATGAAGAAG
AACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAAC
AAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAG
TTATCAAAGANATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAAC
GATGCTGTCTACTTGAGTGATGTTGANAAAGCTCAACTTGAATTGGATGCTGAATTGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACNAACAATCTCC
TGACCATAATTAAAAATCAANTAAAAAATAT
sequence update 2002.10.27
Translated Amino Acid sequence 
*XKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEKIERQQNGNGSPA
VXSHKIVTQMGNVENNEITNEQDAIEQAQHLXRIENGEDIDEYEAAQHEVAFLDENEQDA
AKLQNEMDHIRTLT*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*s
yqrxfkdkinkrnkkfnkrtmlst*vmlxklnlnwmlnwlkiinkrikmri*fkrnxqsp
dhn*ksxkky
Translated Amino Acid sequence (All Frames) 
Frame A:
inxekcsts*ncfre*ktlssrs*rcsreti*rns*fqfe*sssrg*kn*kttkw*wftc
cxls*dcnsngkc*k**nyq*trch*tsstftxy*kw*ryr*v*scpt*sclfr*k*trc
c*itk*ngph*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlk
lskxfqrqdqqkkqkiqqendavylsdvxkaqleldaelaknnkqenqdenlvqekxtis
*p*lkix*ki


Frame B:
*XKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEKIERQQNGNGSPA
VXSHKIVTQMGNVENNEITNEQDAIEQAQHLXRIENGEDIDEYEAAQHEVAFLDENEQDA
AKLQNEMDHIRTLT*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*s
yqrxfkdkinkrnkkfnkrtmlst*vmlxklnlnwmlnwlkiinkrikmri*fkrnxqsp
dhn*ksxkky


Frame C:
kxrkvlnklkll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll
xtlirl*lkwemlkimklpmnkmplnklniyxvlkmvkismsmklpnmklpf*mkmnkml
lnykmkwttlellleeneeeqfsnknlqqlnenenqqqqqgqqqvqatnveqqiveqlkv
ikxisktrstketknstrercclle*c*xsst*igc*ig*k**tresr*efssretnnll
tiiknqxkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF328 (SHF328Q) /CSM/SH/SHF3-B/SHF328Q.Seq.d/                        906   0.0
SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/                        874   0.0
SHB168 (SHB168Q) /CSM/SH/SHB1-C/SHB168Q.Seq.d/                        874   0.0
SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/                        874   0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/                        874   0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/                        874   0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/                        874   0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/                        874   0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/                        874   0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/                        874   0.0
own update 2002.12. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   733   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    90   2e-19  2
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence.    44   0.23   2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.29   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.29   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.29   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.29   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.29   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.29   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.29   1
dna update 2006. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   244   2e-63
(Q3B820) RecName: Full=UPF0564 protein FAM161A;                        40   0.057
AM392832_1(AM392832|pid:none) Synthetic construct Homo sapiens c...    40   0.057
BC107162_1(BC107162|pid:none) Homo sapiens family with sequence ...    40   0.057
AM393518_1(AM393518|pid:none) Synthetic construct Homo sapiens c...    40   0.057
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    40   0.097
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    40   0.097
CP000487_662(CP000487|pid:none) Campylobacter fetus subsp. fetus...    38   0.28
AF063866_45(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    38   0.36
(Q23MT7) RecName: Full=Probable beta-tubulin polyglutamylase;   ...    38   0.37
protein update 2009. 4.18
PSORT 

 psg: 0.51  gvh: 0.17  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHF328 is nuc
5' end seq. ID SHF328F
5' end seq. 
>SHF328F.Seq
ATAAATNAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCT
TCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAA
TAAAGCAGTTCAAGAGGCTGAAAAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGC
TGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAA
TGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATAT
CGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGC
TGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGA
ACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACA
AGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGT
TATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACNNNNNNNNNN
Length of 5' end seq. 588
3' end seq. ID SHF328Z
3' end seq. 
>SHF328Z.Seq
NNNNNNNNNNGTAATGGTTCACCTGCTGTCACTCTCATAAGATTGTAACTCAAATGGGAA
ATGTTGAAAATAATGANATTACCAATGANCAAGATGCCATTGAACAAGCTCANCATTTAC
NGCGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCT
TTTTAGATGAAAATGAACAAGATGCTGCTAAATTACNAAATGAAATGGNCCNCATTAGAA
CTCTTACTTGAAGAGAATGAAGAAGANCAATTTTCAAATAAAAATTTACAACAACTTAAT
GAGAATGANAATCAACAACAACAACAAGGNCANCAACAAGTTCAAGCAACAAATGTTGAN
CAACAAATCGTTGAACAACTTAAAGTTATCAAAGANATTTCAAAGACAAGATCAACNAAA
GAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGANAAAGCTCA
ACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTT
AGTTCAAGAGAAACNAACAATCTCCTGACCATAATTAAAAATCAANTAAAAAATAT
Length of 3' end seq. 596
Connected seq. ID SHF328P
Connected seq. 
>SHF328P.Seq
ATAAATNAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCT
TCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAA
TAAAGCAGTTCAAGAGGCTGAAAAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGC
TGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAA
TGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATAT
CGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGC
TGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGA
ACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACA
AGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGT
TATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAAC----------GTAATGGTTCAC
CTGCTGTCACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGANATTAC
CAATGANCAAGATGCCATTGAACAAGCTCANCATTTACNGCGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACNAAATGAAATGGNCCNCATTAGAACTCTTACTTGAAGAGAATGAAG
AAGANCAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGANAATCAACAACAAC
AACAAGGNCANCAACAAGTTCAAGCAACAAATGTTGANCAACAAATCGTTGAACAACTTA
AAGTTATCAAAGANATTTCAAAGACAAGATCAACNAAAGAAACAAAAAATTCAACAAGAG
AACGATGCTGTCTACTTGAGTGATGTTGANAAAGCTCAACTTGAATTGGATGCTGAATTG
GCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACNAACAATC
TCCTGACCATAATTAAAAATCAANTAAAAAATAT
Length of connected seq. 1164
Full length Seq ID SHF328E
Full length Seq. 
>SHF328E.Seq
ATAAATNAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCT
TCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAA
TAAAGCAGTTCAAGAGGCTGAAAAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGC
TGTANACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAA
TGAACAAGATGCCATTGAACAAGCTCAACATTTACANCGTATTGAAAATGGTGAAGATAT
CGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGC
TGCTAAATTACAAAATGAAATGGACCACATTAGAACTCTTACTTGAAGAGAATGAAGAAG
AACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAAC
AAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAG
TTATCAAAGANATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAAC
GATGCTGTCTACTTGAGTGATGTTGANAAAGCTCAACTTGAATTGGATGCTGAATTGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACNAACAATCTCC
TGACCATAATTAAAAATCAANTAAAAAATAT
Length of full length seq. 751