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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF296
Library SH
(Link to library)
Clone ID SHF296
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHF296P
(Link to Original site)
Representative DNA sequence 
>SHF296 (SHF296Q) /CSM/SH/SHF2-D/SHF296Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XAAAATGGTAATGGTTCACTTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAAT
GTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAA
CGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTT
TTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTC
TTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAG
AATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAA
CAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAA
CAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTT
GAATTGGATACTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTT
CAAGAGAAACAACNATCTCNTGACCNAATTAAAAATCAATTAAAAAATATTCAACATGAA
CAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCNACTATTATTAGAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---NGNGSLAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDTELAKNNKQENQDEN
LVQEKQXSXDXIKNQLKNIQHEQQIQEQQDKLNQEKNXLLLE
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---kmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmk
lxf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqm
lnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwilnwlkiinkrikmr
i*fkrnnxlxtxlkin*kifnmnnksknnkin*ikkkixyy*

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---kw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*s
cxfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc
*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igy*ig*k**tresr*e
fssrettis*pn*ksikkyst*ttnprttr*iksrkkstiir

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---NGNGSLAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDTELAKNNKQENQDEN
LVQEKQXSXDXIKNQLKNIQHEQQIQEQQDKLNQEKNXLLLE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF666 (SHF666Q) /CSM/SH/SHF6-C/SHF666Q.Seq.d/                        605   e-172
SHF296 (SHF296Q) /CSM/SH/SHF2-D/SHF296Q.Seq.d/                        605   e-172
SHF248 (SHF248Q) /CSM/SH/SHF2-B/SHF248Q.Seq.d/                        605   e-172
CHJ201 (CHJ201Q) /CSM/CH/CHJ2-A/CHJ201Q.Seq.d/                        601   e-171
SHF722 (SHF722Q) /CSM/SH/SHF7-A/SHF722Q.Seq.d/                        599   e-170
SHF568 (SHF568Q) /CSM/SH/SHF5-C/SHF568Q.Seq.d/                        599   e-170
SHF463 (SHF463Q) /CSM/SH/SHF4-C/SHF463Q.Seq.d/                        599   e-170
SHF412 (SHF412Q) /CSM/SH/SHF4-A/SHF412Q.Seq.d/                        599   e-170
SHF233 (SHF233Q) /CSM/SH/SHF2-B/SHF233Q.Seq.d/                        599   e-170
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        597   e-169
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   597   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.30   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.30   1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence.    48   0.30   1
BP290409|BP290409.1 Homo sapiens cDNA clone: LNF05006, Sugano cDNA library, expressed in lung normal fibroblast.    48   0.30   1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence.    48   0.30   1
AC124708|AC124708.2 Mus musculus chromosome 6 clone RP24-79O16, complete sequence.    48   0.30   1
AB006702|AB006702.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPO12.    40   0.50   4
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    38   0.60   10
dna update 2006. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   231   2e-59
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.0
protein update 2008.11.16
PSORT 

 psg: 0.64  gvh: 0.31  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHF296 is nuc
5' end seq. ID SHF296F
5' end seq. 
>SHF296F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID SHF296Z
3' end seq. 
>SHF296Z.Seq
NNNNNNNNNNAAAATGGTAATGGTTCACTTGCTGTAAACTCTCATAAGATTGTAACTCAA
ATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAA
CATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAA
GTTGCNTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAA
TTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAA
CTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAAT
GTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAA
CAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAA
GCTCAACTTGAATTGGATACTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAG
AATTTAGTTCAAGAGAAACAACNATCTCNTGACCNAATTAAAAATCAATTAAAAAATATT
CAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCNACTA
TTATTAGAA
Length of 3' end seq. 669
Connected seq. ID SHF296P
Connected seq. 
>SHF296P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-AAAATGGTAATGGTTCACTTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAAT
GTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAA
CGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTT
TTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTC
TTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAG
AATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAA
CAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAA
CAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTT
GAATTGGATACTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTT
CAAGAGAAACAACNATCTCNTGACCNAATTAAAAATCAATTAAAAAATATTCAACATGAA
CAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCNACTATTATTAGAA
Length of connected seq. 770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -