SHF295 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHF295
Library	SH (Link to library)
Clone ID	SHF295 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13024-1\|Contig-U16344-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHF2-D/SHF295Q.Seq.d/
Representative seq. ID	SHF295P (Link to Original site)
Representative DNA sequence	>SHF295 (SHF295Q) /CSM/SH/SHF2-D/SHF295Q.Seq.d/ ACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAACAATTAAA GAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTTTTAAATTA ATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTACTACCAAC CCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATTTTAGTGTA TATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXXXXXXXXTGG TTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGNTCT TAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACTTCAACATTGTTGGTAA CGTTAAAATGGCNGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCAC CACTTCAACCCAAACTTCAATNTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCAC CACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGT TTGTTCAGGTACTGCTGATGTTGCTGGTAACNTCAATGTCGTTGCNTCAGAAGCCAATCA AGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAA TGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGG TGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTATAAAGTTTGGTCAAT TGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCC TCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAA CCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAAC AATAAAAATTTACA
sequence update	2002.10.25
Translated Amino Acid sequence	tnkkqqfkktiiyskvktikeslivffssslipifffklissfsvflhnhnqpyiittn piplqsyllnnyyllyyfsvylliYLLASNKQKK--- ---GSIESKVIDFTHGTIQGVGXLKCGTCNFANKIAANFNIVGNVKMAATATVYANIDAL MSITTSTQTSXSQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNXNVVAS EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAYK VWSIVNSPCNCECGLKRLidstpplqqikiiqliliflysnqcicqltylfkhtlf nfktikiy
Translated Amino Acid sequence (All Frames)	Frame A: tnkkqqfkktiiyskvktikeslivffssslipifffklissfsvflhnhnqpyiittn piplqsyllnnyyllyyfsvylliYLLASNKQKK--- ---wfniksyfhswyhsrcwxsmwyllcqdrclqhcwrngxncnclckhcf nvnhhfnpnfnxsiinqdcqrdhhsiiikliiihltirsndrlfrycccwxqcrcx rsqssnclwyciqihlspscrcllslshxkhccccstscrccccccpkscygccl slvnckftmlmwieeiinfnssspmtinnntthsyfslfpmylsinlltfthpf qfnnknl Frame B: qtknnnlkkqfivkkqlknhlffspphykfqyfflnfpaflffytittnpisllpt lyhynliyiiiicciilvyicfniyqvtnkkk--- ---GSIESKVIDFTHGTIQGVGXLKCGTCNFANKIAANFNIVGNVKMAATATVYANIDAL MSITTSTQTSXSQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNXNVVAS EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAAYK VWSIVNSPCNCECGLKRLidstpplqqikiiqliliflysnqcicqltylfkhtlf nfktikiy Frame C: kqkttiknnnlsknnritncffllltinsniffinfqlfcfftqsqptlyhyyqp ytitilfikllfvvlfcifvdlifiskqtkkk--- ---vqlnqkllislmvpfkvlvxlnvvlvtlpirslltstllvtlkwxqlqlsmqtlml* cqsplqpklqxlnhqprlstvrpplnhhqahhhpslnnsfqsfvqvllmllvtsmslxq kpiklklplvlysnssqpqllkvmspqlavsxqalllllnklpvlllllpkkllwllpik fgqlihhvtvnvdrdykliqlllsndnklkynsflfffiltnvfvnlinflntpfs ilkqkft
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHF295 (SHF295Q) /CSM/SH/SHF2-D/SHF295Q.Seq.d/ 864 0.0 SHF819 (SHF819Q) /CSM/SH/SHF8-A/SHF819Q.Seq.d/ 852 0.0 SHB390 (SHB390Q) /CSM/SH/SHB3-D/SHB390Q.Seq.d/ 848 0.0 SHF737 (SHF737Q) /CSM/SH/SHF7-B/SHF737Q.Seq.d/ 846 0.0 SHF410 (SHF410Q) /CSM/SH/SHF4-A/SHF410Q.Seq.d/ 846 0.0 SHF649 (SHF649Q) /CSM/SH/SHF6-C/SHF649Q.Seq.d/ 842 0.0 SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 841 0.0 SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 841 0.0 SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 841 0.0 SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 841 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U83087\|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 841 0.0 2 AX344185\|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.077 4 AX251781\|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.077 4 BD460245\|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.077 4 BD452167\|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.077 4 AJ297856\|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.10 1 AL845362\|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20. 38 0.31 3 AC162431\|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE. 48 0.40 1 AC148223\|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces. 48 0.40 1 AC127176\|AC127176.3 Rattus norvegicus clone CH230-267P11, * SEQUENCING IN PROGRESS *, 1 ordered piece. 48 0.40 1
dna update	2006. 3.14
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value U83087_1(U83087\|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 244 3e-63 AY530539_1(AY530539\|pid:none) Mimulus ringens deficiens (DEF) mR... 34 9.0
protein update	2008.11.16
PSORT	psg: 0.69 gvh: 0.38 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 40.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for SHF295 is nuc
5' end seq. ID	SHF295F
5' end seq.	>SHF295F.Seq ACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAACAATTAAA GAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTTTTAAATTA ATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTACTACCAAC CCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATTTTAGTGTA TATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq.	297
3' end seq. ID	SHF295Z
3' end seq.	>SHF295Z.Seq NNNNNNNNNNTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAG GTGTTGGTGNTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACTTCA ACATTGTTGGTAACGTTAAAATGGCNGCAACTGCAACTGTCTATGCAAACATTGATGCTT TAATGTCAATCACCACTTCAACCCAAACTTCAATNTCTCAATCATCAACCAAGACTGTCA ACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCG TTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACNTCAATGTCGTTGCNT CAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAG TTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTC AACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTATA AAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAA TTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTT TTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTT TCAATTTTAAAACAATAAAAATTTACA
Length of 3' end seq.	747
Connected seq. ID	SHF295P
Connected seq.	>SHF295P.Seq ACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAAACAATTAAA GAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTTTTTAAATTA ATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATTACTACCAAC CCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTATTTTAGTGTA TATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA----------TGG TTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGNTCT TAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACTTCAACATTGTTGGTAA CGTTAAAATGGCNGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCAC CACTTCAACCCAAACTTCAATNTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCAC CACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGT TTGTTCAGGTACTGCTGATGTTGCTGGTAACNTCAATGTCGTTGCNTCAGAAGCCAATCA AGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAA TGTCTCCTCAGTTAGCTGTCTCACNTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGG TGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTATAAAGTTTGGTCAAT TGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCC TCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAA CCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAAC AATAAAAATTTACA
Length of connected seq.	1024
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas