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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF291
Library SH
(Link to library)
Clone ID SHF291
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11488-1|Contig-U13240-1
Original site URL
Representative seq. ID SHF291P
(Link to Original site)
Representative DNA sequence 
>SHF291 (SHF291Q) /CSM/SH/SHF2-D/SHF291Q.Seq.d/
ATTTATTAATTTATTATTTAATATAAATATTTCTAATATATATATTATATAATAAAACTA
TATAGTTTTTTTTTTTATTATTNATTTATTTATTTATTTTTAATTTTAAAAAAAAAAXXX
XXXXXXXCCNNCNNCANCANCAACACCAAAACCAACTAAACCACCAACATCACCATCACC
ATCACCAAAACCAACCAAACCACCAACAACATCAGCACCACTTAAAAAAGAAACAACATC
ACCAATAAACTTAAGACCAACTCATAAACCACTAACACAACCACCAGTTGATGAATNTAA
GACTGAAGTTTTGGACATTTCTGATGAAACAGAAACTGGAGTAATAACCATTCCAGATGA
TTCTGAAACACCGGCTAAATTAGAAATTCCAGACAATACAAAACCAGAAACACCGATTGA
ATCCTCTGTTCCAATCAAATCTGTTGCTGCAGTTGATAAAACACNTGTTAAATCCGCTGC
TCCAATCGAATCAGCTTCTCCAGTTGATGAAATACCTGTTGAATCCGCTGCTCCAGTTGA
AGAAACTAGAAGTAGAAGACATAAACCAATAAGTGCATACCGAATTGAATAAAAATTTCA
TCACAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iy*fii*ykyf*YIYYIIKLYSFFFYYXFIYLFLILKKK---

---PXXXXTPKPTKPPTSPSPSPKPTKPPTTSAPLKKETTSPINLRPTHKPLTQPPVDEX
KTEVLDISDETETGVITIPDDSETPAKLEIPDNTKPETPIESSVPIKSVAAVDKTXVKSA
APIESASPVDEIPVESAAPVEETRSRRHKPISAYRIE*kfhhk
Translated Amino Acid sequence (All Frames) 
Frame A:
iy*fii*ykyf*YIYYIIKLYSFFFYYXFIYLFLILKKK---

---PXXXXTPKPTKPPTSPSPSPKPTKPPTTSAPLKKETTSPINLRPTHKPLTQPPVDEX
KTEVLDISDETETGVITIPDDSETPAKLEIPDNTKPETPIESSVPIKSVAAVDKTXVKSA
APIESASPVDEIPVESAAPVEETRSRRHKPISAYRIE*kfhhk

Frame B:
finllfninisniyii**nyivfffiixlfiyf*f*kk---

---xxxxqhqnqlnhqhhhhhhqnqpnhqqhqhhlkkkqhhq*t*dqlinh*hnhqlmnx
rlkfwtflmkqkle**pfqmilkhrln*kfqtiqnqkhrlnplfqsnlllqlikhxlnpl
lqsnqllqlmkyllnpllqlkklevedinq*vhtelnknfit

Frame C:
lliyyli*ifliyilynkti*fffllxiylfifnfkkk---

---xxxxntktn*ttnitititktnqttnnistt*krnnitnklktns*ttnttts**x*
d*sfghf**nrnwsnnhsr*f*ntg*irnsrqyktrntd*ilcsnqicccs**ntc*irc
snrisfss**ntc*ircss*rn*k*kt*tnkcipn*ikissq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF291 (SHF291Q) /CSM/SH/SHF2-D/SHF291Q.Seq.d/                        708   0.0
CHL289 (CHL289Q) /CSM/CH/CHL2-D/CHL289Q.Seq.d/                        654   0.0
SHD302 (SHD302Q) /CSM/SH/SHD3-A/SHD302Q.Seq.d/                        527   e-149
CHF578 (CHF578Q) /CSM/CH/CHF5-D/CHF578Q.Seq.d/                        371   e-102
SHH365 (SHH365Q) /CSM/SH/SHH3-C/SHH365Q.Seq.d/                        355   5e-97
SHD785 (SHD785Q) /CSM/SH/SHD7-D/SHD785Q.Seq.d/                        341   8e-93
AHN279 (AHN279Q) /CSM/AH/AHN2-D/AHN279Q.Seq.d/                         62   1e-08
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                         36   0.60
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                         36   0.60
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                         36   0.60
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CZ528160|CZ528160.1 SRAA-aac53e10.g1 Strongyloides ratti whole genome shotgun library(SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.46   3
CZ547074|CZ547074.1 SRAA-aad71f11.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.47   3
CZ533514|CZ533514.1 SRAA-aac85f04.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.51   3
CZ536483|CZ536483.1 SRAA-aad03e04.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.53   3
CZ530245|CZ530245.1 SRAA-aac65h04.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.54   3
CZ544078|CZ544078.1 SRAA-aad53h02.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.56   3
CZ531010|CZ531010.1 SRAA-aac70d10.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.56   3
CZ530149|CZ530149.1 SRAA-aac65d02.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.60   3
DW132999|DW132999.1 CLSX9680.b1_O19.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX9680, mRNA sequence.    46   0.91   1
DW112771|DW112771.1 CLRX9702.b1_L01.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX9702, mRNA sequence.    46   0.91   1
dna update 2006. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM269978_34(AM269978|pid:none) Aspergillus niger contig An01c031...    54   4e-06
CP000733_1938(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    49   8e-05
BC060916_1(BC060916|pid:none) Danio rerio amphiphysin, mRNA (cDN...    47   3e-04
CP001020_1852(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...    47   4e-04
CR382131_768(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    46   7e-04
CR382128_869(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.002
AE008384_2342(AE008384|pid:none) Methanosarcina mazei strain Goe...    43   0.006
QFHUH(S00979) neurofilament triplet H protein - human  &X15306_1...    42   0.010
AB384011_1(AB384011|pid:none) Synthetic construct DNA, clone: pF...    42   0.013
AB020652_1(AB020652|pid:none) Homo sapiens mRNA for KIAA0845 pro...    42   0.013
protein update 2009. 4.18
PSORT 

 psg: 0.98  gvh: 0.42  alm: 0.31  top: 0.73  tms: 0.07  mit: 0.41  mip: 0.12
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHF291 is nuc
5' end seq. ID SHF291F
5' end seq. 
>SHF291F.Seq
ATTTATTAATTTATTATTTAATATAAATATTTCTAATATATATATTATATAATAAAACTA
TATAGTTTTTTTTTTTATTATTNATTTATTTATTTATTTTTAATTTTAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 127
3' end seq. ID SHF291Z
3' end seq. 
>SHF291Z.Seq
NNNNNNNNNNCCNNCNNCANCANCAACACCAAAACCAACTAAACCACCAACATCACCATC
ACCATCACCAAAACCAACCAAACCACCAACAACATCAGCACCACTTAAAAAAGAAACAAC
ATCACCAATAAACTTAAGACCAACTCATAAACCACTAACACAACCACCAGTTGATGAATN
TAAGACTGAAGTTTTGGACATTTCTGATGAAACAGAAACTGGAGTAATAACCATTCCAGA
TGATTCTGAAACACCGGCTAAATTAGAAATTCCAGACAATACAAAACCAGAAACACCGAT
TGAATCCTCTGTTCCAATCAAATCTGTTGCTGCAGTTGATAAAACACNTGTTAAATCCGC
TGCTCCAATCGAATCAGCTTCTCCAGTTGATGAAATACCTGTTGAATCCGCTGCTCCAGT
TGAAGAAACTAGAAGTAGAAGACATAAACCAATAAGTGCATACCGAATTGAATAAAAATT
TCATCACAAA
Length of 3' end seq. 490
Connected seq. ID SHF291P
Connected seq. 
>SHF291P.Seq
ATTTATTAATTTATTATTTAATATAAATATTTCTAATATATATATTATATAATAAAACTA
TATAGTTTTTTTTTTTATTATTNATTTATTTATTTATTTTTAATTTTAAAAAAAAAA---
-------CCNNCNNCANCANCAACACCAAAACCAACTAAACCACCAACATCACCATCACC
ATCACCAAAACCAACCAAACCACCAACAACATCAGCACCACTTAAAAAAGAAACAACATC
ACCAATAAACTTAAGACCAACTCATAAACCACTAACACAACCACCAGTTGATGAATNTAA
GACTGAAGTTTTGGACATTTCTGATGAAACAGAAACTGGAGTAATAACCATTCCAGATGA
TTCTGAAACACCGGCTAAATTAGAAATTCCAGACAATACAAAACCAGAAACACCGATTGA
ATCCTCTGTTCCAATCAAATCTGTTGCTGCAGTTGATAAAACACNTGTTAAATCCGCTGC
TCCAATCGAATCAGCTTCTCCAGTTGATGAAATACCTGTTGAATCCGCTGCTCCAGTTGA
AGAAACTAGAAGTAGAAGACATAAACCAATAAGTGCATACCGAATTGAATAAAAATTTCA
TCACAAA
Length of connected seq. 597
Full length Seq ID -
Full length Seq. -
Length of full length seq. -