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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF263
Library SH
(Link to library)
Clone ID SHF263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID SHF263P
(Link to Original site)
Representative DNA sequence 
>SHF263 (SHF263Q) /CSM/SH/SHF2-C/SHF263Q.Seq.d/
TATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATT
TATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTA
TAAATAAAAAAAAAAXXXXXXXXXXATGGTGATGGTACATATGATGTTGAATTTGAACCA
AAAGAAGCCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTC
CCAAAGACTGTTACCGTTAAACCAGCCCCATCCGCTGAACANTCTTATGCTGAAGGTGAA
GGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACT
AAAGGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGAT
GGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTAT
GATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAA
AATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGT
TCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGT
GATAAATTTGAAGTCTCTATCACTGGTCCAGCTG
sequence update 2002.10.25
Translated Amino Acid sequence 
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---GDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEXSYAEGEGLVKVF
DNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEG
NYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVS
ITGPA
Translated Amino Acid sequence (All Frames) 
Frame A:
yltifiylfikllfiy*iiiy*vv*ttfq*ilifciyilv*ikkk---

---mvmvhmmlnlnqkkpvtmlsisl*mvttsmvsqrllplnqphplnxlmlkvkv*sky
limpqlnslfspltlkvllvpmvvihlkslsmvqmv*slmpklpitmtvlmvlsmmpqlk
vttmlmspsvviqskicqsmsnalkvpmvkihhsvhsllpsllkirkvklkpmvvinlks
lslvql

Frame B:
ilpflfiyllnyylfikllfielcklpsnkf*yfvyiflyk*kk---

---w*wyi*c*i*tkrsr*lcyqshfrw*qrqwfpkdcyr*tspir*txlc*r*rfsqsi
**cps*ihyfrr*h*rccsyrww*si*sryqwsrwfsr*cqsyr*q*rylwccl*cps*r
*lqc*chppw*snqkyanrcqmh*rcqw*rfiirfihfyrrc*k*er*s*nlww**i*sl
yhwss

Frame C:
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---GDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEXSYAEGEGLVKVF
DNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEG
NYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVS
ITGPA
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ144 (VHQ144Q) /CSM/VH/VHQ1-B/VHQ144Q.Seq.d/                       1082   0.0
VHP113 (VHP113Q) /CSM/VH/VHP1-A/VHP113Q.Seq.d/                       1082   0.0
VHO119 (VHO119Q) /CSM/VH/VHO1-A/VHO119Q.Seq.d/                       1082   0.0
VHI292 (VHI292Q) /CSM/VH/VHI2-D/VHI292Q.Seq.d/                       1082   0.0
VHA759 (VHA759Q) /CSM/VH/VHA7-C/VHA759Q.Seq.d/                       1082   0.0
SHL786 (SHL786Q) /CSM/SH/SHL7-D/SHL786Q.Seq.d/                       1082   0.0
SHL695 (SHL695Q) /CSM/SH/SHL6-D/SHL695Q.Seq.d/                       1082   0.0
SHL619 (SHL619Q) /CSM/SH/SHL6-A/SHL619Q.Seq.d/                       1082   0.0
SHK682 (SHK682Q) /CSM/SH/SHK6-D/SHK682Q.Seq.d/                       1082   0.0
SHK595 (SHK595Q) /CSM/SH/SHK5-D/SHK595Q.Seq.d/                       1082   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15430|X15430.1 Dictyostelium discoideum mRNA for gelation factor.  1082   0.0    1
AZ672601|AZ672601.1 ENTMD77TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   0.18   2
BH158643|BH158643.1 ENTTI80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   0.18   2
BH136620|BH136620.1 ENTOX80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   0.19   2
AZ544960|AZ544960.1 ENTFM28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   0.19   2
AZ544906|AZ544906.1 ENTFK82TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   0.19   2
AQ543434|AQ543434.1 RPCI-11-349G2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-349G2, genomic survey sequence.    48   0.27   1
AL356308|AL356308.16 Human DNA sequence from clone RP11-475L16 on chromosome 10.    48   0.27   1
AF080395|AF080395.1 Entamoeba histolytica actin binding protein (abp2) mRNA, partial cds.    44   0.36   2
CR940353|CR940353.1 Theileria annulata genomic DNA chromosome 4.    36   0.48   2
dna update 2006. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...   100   7e-20
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    92   1e-17
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    83   9e-15
BX664723_1(BX664723|pid:none) Human DNA sequence from clone WI2-...    78   3e-13
AK131179_1(AK131179|pid:none) Mus musculus mRNA for mFLJ00343 pr...    77   4e-13
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ...    77   4e-13
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23...    77   4e-13
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F...    77   4e-13
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23...    77   4e-13
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23...    77   4e-13
protein update 2009. 4.18
PSORT 

 psg: 0.89  gvh: 0.39  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHF263 is cyt
5' end seq. ID SHF263F
5' end seq. 
>SHF263F.Seq
TATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATT
TATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTA
TAAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 145
3' end seq. ID SHF263Z
3' end seq. 
>SHF263Z.Seq
NNNNNNNNNNATGGTGATGGTACATATGATGTTGAATTTGAACCAAAAGAAGCCGGTGAC
TATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGTTACC
GTTAAACCAGCCCCATCCGCTGAACANTCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTA
TTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGT
ACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGAT
GCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAA
GGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGAT
GTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACC
GTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTC
TCTATCACTGGTCCAGCTG
Length of 3' end seq. 559
Connected seq. ID SHF263P
Connected seq. 
>SHF263P.Seq
TATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATT
TATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTA
TAAATAAAAAAAAAA----------ATGGTGATGGTACATATGATGTTGAATTTGAACCA
AAAGAAGCCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTC
CCAAAGACTGTTACCGTTAAACCAGCCCCATCCGCTGAACANTCTTATGCTGAAGGTGAA
GGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACT
AAAGGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGAT
GGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTAT
GATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAA
AATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGT
TCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGT
GATAAATTTGAAGTCTCTATCACTGGTCCAGCTG
Length of connected seq. 684
Full length Seq ID -
Full length Seq. -
Length of full length seq. -