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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF262
Library SH
(Link to library)
Clone ID SHF262
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHF262P
(Link to Original site)
Representative DNA sequence 
>SHF262 (SHF262Q) /CSM/SH/SHF2-C/SHF262Q.Seq.d/
ATTTTTAATTTTTATTTTCATCAAAAACCCTGCAAATTAAAATCATTAAAAATAAAAAAA
ATAAAAAATTTTATTATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATA
GTTTTCTTTTTTTTTTTATAATTTTTTATTTATAAAGTTTAATAATAATAATAATAATAA
TAATAATAATAATATTCATTTTTCCATATAATTAATAATTCAXXXXXXXXXXGATAGAGC
TCAAGTTGTACCACGTGTTGTAATTTTCGCCGGTAAAGCTGCCCCAGGTTATGTTATGGN
TAAAAGACATATCAAATTAATCAACTCTGTTGCCGAGGTTATCAACCGTGATAAAGAGGT
CGATCAATACCTCAAGGTTGTTTTCATTGCAAATTACAACGTTTCAATCGCTCAAGTCAT
CGTTCCAGCCTCTGATATCAATCAACAAATTTCAACCGCTGGTACCGAAGCNTCTGGTAC
TAGTAACATGAAATTCACTATGAATGGTAGTTTAATCATTGGTACTTTGGATGGTGCAAA
TGTTGAAATCGCCGAAGAAGTTGGTCAAGAGAATATGTTTATCTTTGGTTTACGTACAAG
TGAAGTTGAAGCTGCTCGTGAAAAAATGACAAACAAAGAAGTCAACATTGACCCACGTCT
TCAAGAGGTATTCCTTAATATTGAATTAGGTACATTTGGTCCACCAGATGTTTTCAGACC
AATCTTGGACTCTTTAATCTTTAGTGATTTCTACTTAAGCATTCAAGATTTCCCACTCTA
CCTTGACTCTCAAGCTTCAGTTGATGAATTATGGAAAGATCAAAGTGCTTGGGTTAAAAA
ATCAATCATTAACAGTGCTTCAACTTATTTCTTCTCTTCTGATAGAGCTATGAATGAATA
TGCTGAACAAATTTGGGATATTAAACCATGGAAGTNAAACACTTTAAATAGAAGATATTA
AAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ifnfyfhqkpcklkslkikkiknfiifininnfllliiiivffffl*ffiykv*******
****YSFFHIINNS---

---DRAQVVPRVVIFAGKAAPGYVMXKRHIKLINSVAEVINRDKEVDQYLKVVFIANYNV
SIAQVIVPASDINQQISTAGTEASGTSNMKFTMNGSLIIGTLDGANVEIAEEVGQENMFI
FGLRTSEVEAAREKMTNKEVNIDPRLQEVFLNIELGTFGPPDVFRPILDSLIFSDFYLSI
QDFPLYLDSQASVDELWKDQSAWVKKSIINSASTYFFSSDRAMNEYAEQIWDIKPWKXNT
LNRRY*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ifnfyfhqkpcklkslkikkiknfiifininnfllliiiivffffl*ffiykv*******
****YSFFHIINNS---

---DRAQVVPRVVIFAGKAAPGYVMXKRHIKLINSVAEVINRDKEVDQYLKVVFIANYNV
SIAQVIVPASDINQQISTAGTEASGTSNMKFTMNGSLIIGTLDGANVEIAEEVGQENMFI
FGLRTSEVEAAREKMTNKEVNIDPRLQEVFLNIELGTFGPPDVFRPILDSLIFSDFYLSI
QDFPLYLDSQASVDELWKDQSAWVKKSIINSASTYFFSSDRAMNEYAEQIWDIKPWKXNT
LNRRY*k

Frame B:
flififiknpan*nh*k*kk*killflliliiffy*ll**fsfffynflfikfnnnnnnn
nnnnihfsi*lii---

---ielklyhvl*fspvklpqvmlwxkdisn*stllprlstvikrsintsrlfslqittf
qslkssfqplisinkfqplvpkxlvlvt*nsl*mvv*slvlwmvqmlkspkklvkricls
lvyvqvklkllvkk*qtkkstlthvfkrysliln*vhlvhqmfsdqswtl*slvist*af
kishstltlklqlmnygkikvlglknqsltvlqlisslliel*mnmlnkfgilnhgsxtl
*iedikk

Frame C:
f*flfssktlqikiiknkknkkfyyfy*y**fsfinyynsflfffiifyl*sliiiiiii
iiiififpyn**f---

---*ssscttccnfrr*scprlcyg*ktyqinqlccrgyqp**rgrsipqgcfhcklqrf
nrsshrssl*yqstnfnrwyrsxwy**heihyew*fnhwyfgwckc*nrrrswsreyvyl
wftyk*s*scs*kndkqrsqh*ptssrgip*y*iryiwstrcfqtnlglfnl**fllkhs
rfptlp*lssfs**imerskclg*kinh*qcfnlfllf**sye*ic*tnlgy*tmevkhf
k*kilk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF262 (SHF262Q) /CSM/SH/SHF2-C/SHF262Q.Seq.d/                       1451   0.0
SHG719 (SHG719Q) /CSM/SH/SHG7-A/SHG719Q.Seq.d/                       1421   0.0
CHQ714 (CHQ714Q) /CSM/CH/CHQ7-A/CHQ714Q.Seq.d/                       1415   0.0
CHH266 (CHH266Q) /CSM/CH/CHH2-C/CHH266Q.Seq.d/                       1407   0.0
CHL803 (CHL803Q) /CSM/CH/CHL8-A/CHL803Q.Seq.d/                       1403   0.0
CHL725 (CHL725Q) /CSM/CH/CHL7-B/CHL725Q.Seq.d/                       1400   0.0
SHK596 (SHK596Q) /CSM/SH/SHK5-D/SHK596Q.Seq.d/                       1398   0.0
SHL775 (SHL775Q) /CSM/SH/SHL7-D/SHL775Q.Seq.d/                       1394   0.0
SHJ739 (SHJ739Q) /CSM/SH/SHJ7-B/SHJ739Q.Seq.d/                       1394   0.0
CHH270 (CHH270Q) /CSM/CH/CHH2-C/CHH270Q.Seq.d/                       1394   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1.  1372   0.0    2
M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   143   5e-46  4
DN200044|DN200044.1 USDA-FP_138108 Citrus root weevil whole body adult Diaprepes abbreviatus cDNA clone WHDRWA009_E01 5', mRNA sequence.    68   1e-16  3
AY050311|AY050311.1 Entamoeba histolytica glycogen phosphorylase mRNA, complete cds.    68   5e-13  3
AZ693437|AZ693437.1 ENTKO14TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   4e-12  2
BH149199|BH149199.1 ENTQG01TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   4e-12  2
AZ668559|AZ668559.1 ENTLD89TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    64   5e-11  2
AZ550934|AZ550934.1 ENTEY06TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-11  2
CX589990|CX589990.1 TTE00019959 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    78   4e-10  1
CP000021|CP000021.1 Vibrio fischeri ES114 chromosome II, complete sequence.    52   2e-09  2
dna update 2006. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X62142_1(X62142|pid:none) D. discoideum glpV gene for glycogen p...   460   e-128
(Q00766) RecName: Full=Glycogen phosphorylase 1;          Short=...   460   e-128
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...   247   4e-64
CU633897_282(CU633897|pid:none) Podospora anserina genomic DNA c...   239   7e-62
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   239   1e-61
CP001048_3930(CP001048|pid:none) Yersinia pseudotuberculosis PB1...   239   1e-61
AD0479(AD0479) glycogen phosphorylase (EC 2.4.1.1) [imported] - ...   239   1e-61
CP000720_3945(CP000720|pid:none) Yersinia pseudotuberculosis IP ...   239   1e-61
DQ279077_1(DQ279077|pid:none) Chlamydomonas reinhardtii PhoB (PH...   239   1e-61
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...   238   2e-61
protein update 2009. 4.18
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHF262 is cyt
5' end seq. ID SHF262F
5' end seq. 
>SHF262F.Seq
ATTTTTAATTTTTATTTTCATCAAAAACCCTGCAAATTAAAATCATTAAAAATAAAAAAA
ATAAAAAATTTTATTATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATA
GTTTTCTTTTTTTTTTTATAATTTTTTATTTATAAAGTTTAATAATAATAATAATAATAA
TAATAATAATAATATTCATTTTTCCATATAATTAATAATTCANNNNNNNNNN
Length of 5' end seq. 232
3' end seq. ID SHF262Z
3' end seq. 
>SHF262Z.Seq
NNNNNNNNNNGATAGAGCTCAAGTTGTACCACGTGTTGTAATTTTCGCCGGTAAAGCTGC
CCCAGGTTATGTTATGGNTAAAAGACATATCAAATTAATCAACTCTGTTGCCGAGGTTAT
CAACCGTGATAAAGAGGTCGATCAATACCTCAAGGTTGTTTTCATTGCAAATTACAACGT
TTCAATCGCTCAAGTCATCGTTCCAGCCTCTGATATCAATCAACAAATTTCAACCGCTGG
TACCGAAGCNTCTGGTACTAGTAACATGAAATTCACTATGAATGGTAGTTTAATCATTGG
TACTTTGGATGGTGCAAATGTTGAAATCGCCGAAGAAGTTGGTCAAGAGAATATGTTTAT
CTTTGGTTTACGTACAAGTGAAGTTGAAGCTGCTCGTGAAAAAATGACAAACAAAGAAGT
CAACATTGACCCACGTCTTCAAGAGGTATTCCTTAATATTGAATTAGGTACATTTGGTCC
ACCAGATGTTTTCAGACCAATCTTGGACTCTTTAATCTTTAGTGATTTCTACTTAAGCAT
TCAAGATTTCCCACTCTACCTTGACTCTCAAGCTTCAGTTGATGAATTATGGAAAGATCA
AAGTGCTTGGGTTAAAAAATCAATCATTAACAGTGCTTCAACTTATTTCTTCTCTTCTGA
TAGAGCTATGAATGAATATGCTGAACAAATTTGGGATATTAAACCATGGAAGTNAAACAC
TTTAAATAGAAGATATTAAAAAA
Length of 3' end seq. 743
Connected seq. ID SHF262P
Connected seq. 
>SHF262P.Seq
ATTTTTAATTTTTATTTTCATCAAAAACCCTGCAAATTAAAATCATTAAAAATAAAAAAA
ATAAAAAATTTTATTATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATA
GTTTTCTTTTTTTTTTTATAATTTTTTATTTATAAAGTTTAATAATAATAATAATAATAA
TAATAATAATAATATTCATTTTTCCATATAATTAATAATTCA----------GATAGAGC
TCAAGTTGTACCACGTGTTGTAATTTTCGCCGGTAAAGCTGCCCCAGGTTATGTTATGGN
TAAAAGACATATCAAATTAATCAACTCTGTTGCCGAGGTTATCAACCGTGATAAAGAGGT
CGATCAATACCTCAAGGTTGTTTTCATTGCAAATTACAACGTTTCAATCGCTCAAGTCAT
CGTTCCAGCCTCTGATATCAATCAACAAATTTCAACCGCTGGTACCGAAGCNTCTGGTAC
TAGTAACATGAAATTCACTATGAATGGTAGTTTAATCATTGGTACTTTGGATGGTGCAAA
TGTTGAAATCGCCGAAGAAGTTGGTCAAGAGAATATGTTTATCTTTGGTTTACGTACAAG
TGAAGTTGAAGCTGCTCGTGAAAAAATGACAAACAAAGAAGTCAACATTGACCCACGTCT
TCAAGAGGTATTCCTTAATATTGAATTAGGTACATTTGGTCCACCAGATGTTTTCAGACC
AATCTTGGACTCTTTAATCTTTAGTGATTTCTACTTAAGCATTCAAGATTTCCCACTCTA
CCTTGACTCTCAAGCTTCAGTTGATGAATTATGGAAAGATCAAAGTGCTTGGGTTAAAAA
ATCAATCATTAACAGTGCTTCAACTTATTTCTTCTCTTCTGATAGAGCTATGAATGAATA
TGCTGAACAAATTTGGGATATTAAACCATGGAAGTNAAACACTTTAAATAGAAGATATTA
AAAAA
Length of connected seq. 955
Full length Seq ID -
Full length Seq. -
Length of full length seq. -