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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF261
Library SH
(Link to library)
Clone ID SHF261
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12079-1
Original site URL
Representative seq. ID SHF261P
(Link to Original site)
Representative DNA sequence 
>SHF261 (SHF261Q) /CSM/SH/SHF2-C/SHF261Q.Seq.d/
TTTTGAGCATCATCTCTTGAAATTAAACCTGGTACCCAGAATTGAACATTGGCAATCTCT
CTTGTACCTTTAGTACAAACATAACAATTCCAATCTGAATTGAATGAACAAGTATTATCG
AATTGCCAAAATTTCTCATGAGATCCAATTAGGGTTGGAACATTTTTACCTGTTAAACTA
CCATCCCAATCGATGAAATTAAAGAATCTACTACTACCAGTACTATTGACAGGAATATTA
TGACCGATGAATTGTGAGGTAGCAGTGTTTTGAATTGTGATATTCTTTGATACTGATATA
CCTTGTGGAAGGAATTCTGAACTATGTGTCATACTAATGATGACTCTATTATCTTCTTCA
TTGGATGATGCATTTTGATACTTTATAAAATTTCTAAAGATGATATTACTAATGATGGTC
TGAACGTAAGTATCATAAAATTGGAAACCTTGTCTAGTGTATTCGACACTTGCTGATAAG
ATATTACCCGAGTGACCATTGACGATTGCATTTGATAACCATGCTTCACCAAATAATGAA
GCAGGTCTTCTAGAGTCATGACTCTCCAAATTGACTGCCTCAGTTCTTTCACCCCACATT
GATAAACCTCTATXXXXXXXXXXGAAGAAATTGTATTATCACTTGATAATGCTTGACCCA
ATTTAAAATTAAAAGAGAATACATAATTTACGTTGGCTCTTAATGCTGGTGATGGTATCT
TTGAAATTAACCAATTACTATCTGGTGAATAGGTTTCATTAAAATTAATAGAAAATGAAT
TTGCAATACCATTTGGTCCATCTGAAATACTTTTTTCATTGAACTTATATCTTGATCTAA
ATCTTAAATTGCTTTTATCAAAATTAAAATCTAATATTGGTGTTACACTTGAAAATGATG
GTGAACTTGGTGAACTTGATGATGCCATTGTTGGTCTCCATGTTGATGTTGTTGGACATG
AATCTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGAGTTATTGTTGGTG
TCGTTGTTGGTGTTGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGAGTAGTTGTTGGAG
TAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGTG
TAGTTGTTGGTGTGGTTGTTGGAGTGGTTGTTGGAGTGGTTGTTGGAGTAGTACCAGTGA
TTGTGACTCCATTAGCATTGATAANTAATTTAGAAGAAGTACNTTCATTACNACTACCAG
TAGTATTTAAACCATCCACTTTAATATCACAAGCTTCATCGATTTTTAAACTATTACTAT
AAATATNCTAATAAACCT
sequence update 2002.10.25
Translated Amino Acid sequence 
f*assleikpgtqn*tlaislvplvqt*qfqselneqvlsncqnfs*dpirvgtflpvkl
psqsmklknlllpvlltgil*pmncevavf*iviffdtdipcgrnselcvilmmtllsss
lddaf*yfikflkmillmmv*t*vs*nwkpclvystladkilpe*pltiafdnhaspnne
aglles*LSKLTASVLSPHIDKPL---

---KKLYYHLIMLDPI*n*krihnlrwllmlvmvslkltnyylvnrfh*n**kmnlqyhl
vhlkyffh*tyili*ilncfyqn*nlilvlhlkmmvnlvnlmmpllvsmlmlldmnllv*
llv*llv*llelllvsllvlllv*llv*lle*lle*lle*lle*lle*lle*llv*llvw
llewllewlle*yq*l*lh*h**xi*kkyxhyxyq*ylnhpl*yhklhrflnyyykyxnk
p
Translated Amino Acid sequence (All Frames) 
Frame A:
f*assleikpgtqn*tlaislvplvqt*qfqselneqvlsncqnfs*dpirvgtflpvkl
psqsmklknlllpvlltgil*pmncevavf*iviffdtdipcgrnselcvilmmtllsss
lddaf*yfikflkmillmmv*t*vs*nwkpclvystladkilpe*pltiafdnhaspnne
aglles*LSKLTASVLSPHIDKPL---

---eeivlsldna*pnlklkent*ftlalnagdgifeinqllsge*vslklienefaipf
gpseilfslnlyldlnlklllsklksnigvtlendgelgelddaivglhvdvvghesvgv
vvgvvvgvvvgvivgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgv
vvgvvvgvvvgvvpvivtplalixnleevxslxlpvvfkpstlisqassifklll*ix**
t

Frame B:
fehhllklnlvpriehwqsllyl*ykhnnsnln*mnkyyriakisheiqlglehfyllny
hpnr*n*riyyyqyy*qeyydr*ivr*qcfel*ysliliylvegilnyvsy***lyyllh
wmmhfdtl*nf*r*yy**wserkyhkignlv*cirhlliryypsdh*rlhlitmlhqimk
qvf*shdspn*lpqffhptlinly---

---KKLYYHLIMLDPI*n*krihnlrwllmlvmvslkltnyylvnrfh*n**kmnlqyhl
vhlkyffh*tyili*ilncfyqn*nlilvlhlkmmvnlvnlmmpllvsmlmlldmnllv*
llv*llv*llelllvsllvlllv*llv*lle*lle*lle*lle*lle*lle*llv*llvw
llewllewlle*yq*l*lh*h**xi*kkyxhyxyq*ylnhpl*yhklhrflnyyykyxnk
p

Frame C:
lsiis*n*twypelnignlsctfstnitipi*ie*tsiielpkflmrsn*gwniftc*tt
ipideikestttstidrnimtdel*gssvlncdil*y*ytlwkef*tmchtnddsiiffi
g*cililykiskdditndglnvsiikletlssvfdtc**ditrvtiddci**pcftk**s
rssrvmtlqidclssftph**ts---

---rnciit**cltqfkikreyiiyvgs*cw*wyl*n*pitiw*igfikinrk*icntiw
si*ntffielis*sks*iafikiki*ywcyt*k*w*tw*t**chcwspc*ccwt*icwcs
cwcscwcscwsycwcrcwcccwcscwcscwsscwsscwsscwsscwsscwsscwcscwcg
cwsgcwsgcwsstsdcdsisidx*frrstfitttssi*tihfnitsfidf*titinxlin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF261 (SHF261Q) /CSM/SH/SHF2-C/SHF261Q.Seq.d/                       1852   0.0
FC-AR02 (FC-AR02Q) /CSM/FC/FC-AR/FC-AR02Q.Seq.d/                       64   6e-09
VHO882 (VHO882Q) /CSM/VH/VHO8-D/VHO882Q.Seq.d/                         62   2e-08
VHN290 (VHN290Q) /CSM/VH/VHN2-D/VHN290Q.Seq.d/                         62   2e-08
VHJ857 (VHJ857Q) /CSM/VH/VHJ8-C/VHJ857Q.Seq.d/                         62   2e-08
VHM312 (VHM312Q) /CSM/VH/VHM3-A/VHM312Q.Seq.d/                         56   1e-06
VHH761 (VHH761Q) /CSM/VH/VHH7-C/VHH761Q.Seq.d/                         52   2e-05
VHM557 (VHM557Q) /CSM/VH/VHM5-C/VHM557Q.Seq.d/                         40   0.086
SLK713 (SLK713Q) /CSM/SL/SLK7-A/SLK713Q.Seq.d/                         40   0.086
SLJ186 (SLJ186Q) /CSM/SL/SLJ1-D/SLJ186Q.Seq.d/                         40   0.086
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

T14376|T14376.1 SMEST0037 Schistosoma mansoni, adult worm, Gloria FrancoSchistosoma mansoni cDNA clone SMPAB14 3' end, mRNA sequence.    56   0.002  1
T14342|T14342.1 SMEST0003 Schistosoma mansoni, adult worm, Gloria Franco Schistosoma mansoni cDNA clone SMPAA02 3' end, mRNA sequence.    56   0.002  1
CD075643|CD075643.1 MA3-0001U-M329-E06-U.G MA3-0001 Schistosoma mansoni cDNA clone MA3-0001U-M329-E06.G, mRNA sequence.    56   0.002  1
AI976081|AI976081.1 EST270675 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFBA63 5' end, mRNA sequence.    56   0.002  1
AI395315|AI395315.1 MA002892.C8F Soares normalized S8W Schistosoma mansoni cDNA 3', mRNA sequence.    56   0.002  1
AI019013|AI019013.1 SMEST0653 Schistosoma mansoni, adult worm, Gloria Franco Schistosoma mansoni cDNA clone SMPBG60 3' end similar to Y-box binding protein, mRNA sequence.    56   0.002  1
AI019000|AI019000.1 SMEST0640 Schistosoma mansoni, adult worm, Gloria Franco Schistosoma mansoni cDNA clone SMPBG25 3' end similar to Y-box binding protein, mRNA sequence.    56   0.002  1
AI018998|AI018998.1 SMEST0638 Schistosoma mansoni, adult worm, Gloria Franco Schistosoma mansoni cDNA clone SMPBF77 3' end similar to Y-box binding protein, mRNA sequence.    56   0.002  1
AI018989|AI018989.1 SMEST0629 Schistosoma mansoni, adult worm, Gloria Franco Schistosoma mansoni cDNA clone SMPBF16 3' end similar to Y-box binding protein, mRNA sequence.    56   0.002  1
AI018985|AI018985.1 SMEST0625 Schistosoma mansoni, adult worm, Gloria Franco Schistosoma mansoni cDNA clone SMPBF05 3' end similar to Y-box binding protein, mRNA sequence.    56   0.002  1
dna update 2006. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromos...   235   3e-60
A71661(A71661) hypothetical protein RP563 - Rickettsia prowazeki...    39   0.53
AK029742_1(AK029742|pid:none) Mus musculus adult male testis cDN...    35   7.6
DQ997624_142(DQ997624|pid:none) Thermus thermophilus phage YS40,...    35   7.6
AE014188_81(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.9
(Q53591) RecName: Full=Hyaluronate lyase;          EC=4.2.2.1; A...    34   9.9
(Q06179) RecName: Full=Protein FMP27, mitochondrial; AltName: Fu...    34   9.9
Y15903_2(Y15903|pid:none) Streptococcus agalactiae hylB gene and...    34   9.9
protein update 2009. 4.18
PSORT 

 psg: 0.88  gvh: 0.19  alm: 0.56  top: 0.60  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SHF261 is nuc
5' end seq. ID SHF261F
5' end seq. 
>SHF261F.Seq
TTTTGAGCATCATCTCTTGAAATTAAACCTGGTACCCAGAATTGAACATTGGCAATCTCT
CTTGTACCTTTAGTACAAACATAACAATTCCAATCTGAATTGAATGAACAAGTATTATCG
AATTGCCAAAATTTCTCATGAGATCCAATTAGGGTTGGAACATTTTTACCTGTTAAACTA
CCATCCCAATCGATGAAATTAAAGAATCTACTACTACCAGTACTATTGACAGGAATATTA
TGACCGATGAATTGTGAGGTAGCAGTGTTTTGAATTGTGATATTCTTTGATACTGATATA
CCTTGTGGAAGGAATTCTGAACTATGTGTCATACTAATGATGACTCTATTATCTTCTTCA
TTGGATGATGCATTTTGATACTTTATAAAATTTCTAAAGATGATATTACTAATGATGGTC
TGAACGTAAGTATCATAAAATTGGAAACCTTGTCTAGTGTATTCGACACTTGCTGATAAG
ATATTACCCGAGTGACCATTGACGATTGCATTTGATAACCATGCTTCACCAAATAATGAA
GCAGGTCTTCTAGAGTCATGACTCTCCAAATTGACTGCCTCAGTTCTTTCACCCCACATT
GATAAACCTCTATNNNNNNNNNN
Length of 5' end seq. 623
3' end seq. ID SHF261Z
3' end seq. 
>SHF261Z.Seq
NNNNNNNNNNGAAGAAATTGTATTATCACTTGATAATGCTTGACCCAATTTAAAATTAAA
AGAGAATACATAATTTACGTTGGCTCTTAATGCTGGTGATGGTATCTTTGAAATTAACCA
ATTACTATCTGGTGAATAGGTTTCATTAAAATTAATAGAAAATGAATTTGCAATACCATT
TGGTCCATCTGAAATACTTTTTTCATTGAACTTATATCTTGATCTAAATCTTAAATTGCT
TTTATCAAAATTAAAATCTAATATTGGTGTTACACTTGAAAATGATGGTGAACTTGGTGA
ACTTGATGATGCCATTGTTGGTCTCCATGTTGATGTTGTTGGACATGAATCTGTTGGTGT
AGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGAGTTATTGTTGGTGTCGTTGTTGGTGT
TGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGT
AGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGTGTAGTTGTTGGTGT
GGTTGTTGGAGTGGTTGTTGGAGTGGTTGTTGGAGTAGTACCAGTGATTGTGACTCCATT
AGCATTGATAANTAATTTAGAAGAAGTACNTTCATTACNACTACCAGTAGTATTTAAACC
ATCCACTTTAATATCACAAGCTTCATCGATTTTTAAACTATTACTATAAATATNCTAATA
AACCT
Length of 3' end seq. 725
Connected seq. ID SHF261P
Connected seq. 
>SHF261P.Seq
TTTTGAGCATCATCTCTTGAAATTAAACCTGGTACCCAGAATTGAACATTGGCAATCTCT
CTTGTACCTTTAGTACAAACATAACAATTCCAATCTGAATTGAATGAACAAGTATTATCG
AATTGCCAAAATTTCTCATGAGATCCAATTAGGGTTGGAACATTTTTACCTGTTAAACTA
CCATCCCAATCGATGAAATTAAAGAATCTACTACTACCAGTACTATTGACAGGAATATTA
TGACCGATGAATTGTGAGGTAGCAGTGTTTTGAATTGTGATATTCTTTGATACTGATATA
CCTTGTGGAAGGAATTCTGAACTATGTGTCATACTAATGATGACTCTATTATCTTCTTCA
TTGGATGATGCATTTTGATACTTTATAAAATTTCTAAAGATGATATTACTAATGATGGTC
TGAACGTAAGTATCATAAAATTGGAAACCTTGTCTAGTGTATTCGACACTTGCTGATAAG
ATATTACCCGAGTGACCATTGACGATTGCATTTGATAACCATGCTTCACCAAATAATGAA
GCAGGTCTTCTAGAGTCATGACTCTCCAAATTGACTGCCTCAGTTCTTTCACCCCACATT
GATAAACCTCTAT----------GAAGAAATTGTATTATCACTTGATAATGCTTGACCCA
ATTTAAAATTAAAAGAGAATACATAATTTACGTTGGCTCTTAATGCTGGTGATGGTATCT
TTGAAATTAACCAATTACTATCTGGTGAATAGGTTTCATTAAAATTAATAGAAAATGAAT
TTGCAATACCATTTGGTCCATCTGAAATACTTTTTTCATTGAACTTATATCTTGATCTAA
ATCTTAAATTGCTTTTATCAAAATTAAAATCTAATATTGGTGTTACACTTGAAAATGATG
GTGAACTTGGTGAACTTGATGATGCCATTGTTGGTCTCCATGTTGATGTTGTTGGACATG
AATCTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGAGTTATTGTTGGTG
TCGTTGTTGGTGTTGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGAGTAGTTGTTGGAG
TAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGTG
TAGTTGTTGGTGTGGTTGTTGGAGTGGTTGTTGGAGTGGTTGTTGGAGTAGTACCAGTGA
TTGTGACTCCATTAGCATTGATAANTAATTTAGAAGAAGTACNTTCATTACNACTACCAG
TAGTATTTAAACCATCCACTTTAATATCACAAGCTTCATCGATTTTTAAACTATTACTAT
AAATATNCTAATAAACCT
Length of connected seq. 1328
Full length Seq ID -
Full length Seq. -
Length of full length seq. -