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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF254
Library SH
(Link to library)
Clone ID SHF254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1
Original site URL
Representative seq. ID SHF254P
(Link to Original site)
Representative DNA sequence 
>SHF254 (SHF254Q) /CSM/SH/SHF2-C/SHF254Q.Seq.d/
ATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAAAA
AATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAAXXXXXXXXXXAAA
CTTTCAATTTTTGAAGAACCATCAACATTATCAAATGAAAAATNTGATAAAACTANTGAT
GGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAANTANT
GAACATCCAAATAGTANTGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATC
AAAGCTTTTTCAAGTACAACNCCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATA
GACTTTCAATCATCCACTCCAAATAAACAACAACTACCTCCACCACCACCACGACAAACA
AAGAAAACCCAAATGGTATNTCATTTCATGCCAACTGATGAATGGTTACAAGATATTAAA
AAACAATTACCATTAGATAATATNTTAAAAGTTATAACTCATTTATCACCACAAATTCAA
GGTTTATGCACTGGTTCGGGATNTGACGAACAAAAAATCATGGACTACTTGAAAATGTCA
ACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGANTCGTCGTTATCATTCAAAT
GCTATTACAAAATCTTGGTTCATTGCATACATGTGGTGTATCATTTATTTAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
i*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---KLSIFEEPSTLSNEKXDKTXDGGDHQDESISKSKVQSKPXXEHPNSXGATPSSTNSG
TPTIKAFSSTTPNQESPKLGGDGIDFQSSTPNKQQLPPPPPRQTKKTQMVXHFMPTDEWL
QDIKKQLPLDNXLKVITHLSPQIQGLCTGSGXDEQKIMDYLKMSTIVGIFHNPGPIMXRR
YHSNAITKSWFIAYMWCIIYL
Translated Amino Acid sequence (All Frames) 
Frame A:
i*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---KLSIFEEPSTLSNEKXDKTXDGGDHQDESISKSKVQSKPXXEHPNSXGATPSSTNSG
TPTIKAFSSTTPNQESPKLGGDGIDFQSSTPNKQQLPPPPPRQTKKTQMVXHFMPTDEWL
QDIKKQLPLDNXLKVITHLSPQIQGLCTGSGXDEQKIMDYLKMSTIVGIFHNPGPIMXRR
YHSNAITKSWFIAYMWCIIYL

Frame B:
ynqtieinsnlt*kk*knkkikikkkk*krkkkkk---

---nfqflknhqhyqmknxiklxmvviikmnqfqsqrfkvnqxxniqivxvqhhpqqiqe
hqlsklfqvqxqiknhqnwvvmv*tfnhplqinnnylhhhhdkqrkpkwyxiscqlmngy
kilknnyh*iix*kl*liyhhkfkvyalvrdxtnkkswtt*kcqqllafsitqvq**xvv
iiqmllqnlgslhtcgvsfi*

Frame C:
iikl*rsivi*hkknkkikk*k*krknkkekrkkk---

---tfnf*rtiniik*kx**nx*ww*ssr*infkvkgsk*txx*tsk*xwcntilnkfrn
tnyqsffkynxksritkigw*wyrlsiihsk*ttttstttttnkenpngxsfhan**mvt
ry*ktitir*yxksynsfittnsrfmhwfgx*rtknhgllenvnncwhfp*prsnnxssl
sfkcyykilvhcihvvyhlfr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF254 (SHF254Q) /CSM/SH/SHF2-C/SHF254Q.Seq.d/                       1122   0.0
AHN371 (AHN371Q) /CSM/AH/AHN3-C/AHN371Q.Seq.d/                       1108   0.0
AHJ146 (AHJ146Q) /CSM/AH/AHJ1-B/AHJ146Q.Seq.d/                       1108   0.0
CHM661 (CHM661Q) /CSM/CH/CHM6-C/CHM661Q.Seq.d/                       1102   0.0
AHL223 (AHL223Q) /CSM/AH/AHL2-A/AHL223Q.Seq.d/                       1102   0.0
CHM584 (CHM584Q) /CSM/CH/CHM5-D/CHM584Q.Seq.d/                       1100   0.0
CHI790 (CHI790Q) /CSM/CH/CHI7-D/CHI790Q.Seq.d/                       1100   0.0
CHG383 (CHG383Q) /CSM/CH/CHG3-D/CHG383Q.Seq.d/                       1100   0.0
VHN140 (VHN140Q) /CSM/VH/VHN1-B/VHN140Q.Seq.d/                       1098   0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/                       1098   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DE283369|DE283369.1 Oryzias latipes DNA, clone: ola1-242I19.F, genomic survey sequence.    54   0.004  1
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence.    54   0.004  1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence.    54   0.004  1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence.    54   0.004  1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence.    54   0.004  1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence.    54   0.004  1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence.    54   0.004  1
DE281772|DE281772.1 Oryzias latipes DNA, clone: ola1-240B23.R, genomic survey sequence.    52   0.017  1
DE249099|DE249099.1 Oryzias latipes DNA, clone: ola1-114O07.F, genomic survey sequence.    52   0.017  1
DE270448|DE270448.1 Oryzias latipes DNA, clone: ola1-194O14.R, genomic survey sequence.    52   0.017  1
dna update 2006. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr...    79   2e-13
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A...    78   2e-13
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet...    78   2e-13
AE013599_1507(AE013599|pid:none) Drosophila melanogaster chromos...    78   2e-13
AB171620_1(AB171620|pid:none) Macaca fascicularis brain cDNA clo...    78   2e-13
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI...    78   3e-13
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho...    78   3e-13
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ...    78   3e-13
AK050531_1(AK050531|pid:none) Mus musculus adult pancreas islet ...    78   3e-13
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA...    76   8e-13
protein update 2009. 4.18
PSORT 

 psg: 0.25  gvh: 0.25  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHF254 is nuc
5' end seq. ID SHF254F
5' end seq. 
>SHF254F.Seq
ATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAAAA
AATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 117
3' end seq. ID SHF254Z
3' end seq. 
>SHF254Z.Seq
NNNNNNNNNNAAACTTTCAATTTTTGAAGAACCATCAACATTATCAAATGAAAAATNTGA
TAAAACTANTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCAAAG
TAAACCAANTANTGAACATCCAAATAGTANTGGTGCAACACCATCCTCAACAAATTCAGG
AACACCAACTATCAAAGCTTTTTCAAGTACAACNCCAAATCAAGAATCACCAAAATTGGG
TGGTGATGGTATAGACTTTCAATCATCCACTCCAAATAAACAACAACTACCTCCACCACC
ACCACGACAAACAAAGAAAACCCAAATGGTATNTCATTTCATGCCAACTGATGAATGGTT
ACAAGATATTAAAAAACAATTACCATTAGATAATATNTTAAAAGTTATAACTCATTTATC
ACCACAAATTCAAGGTTTATGCACTGGTTCGGGATNTGACGAACAAAAAATCATGGACTA
CTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGANTCGTCG
TTATCATTCAAATGCTATTACAAAATCTTGGTTCATTGCATACATGTGGTGTATCATTTA
TTTAGA
Length of 3' end seq. 606
Connected seq. ID SHF254P
Connected seq. 
>SHF254P.Seq
ATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAAAA
AATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAA----------AAA
CTTTCAATTTTTGAAGAACCATCAACATTATCAAATGAAAAATNTGATAAAACTANTGAT
GGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAANTANT
GAACATCCAAATAGTANTGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATC
AAAGCTTTTTCAAGTACAACNCCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATA
GACTTTCAATCATCCACTCCAAATAAACAACAACTACCTCCACCACCACCACGACAAACA
AAGAAAACCCAAATGGTATNTCATTTCATGCCAACTGATGAATGGTTACAAGATATTAAA
AAACAATTACCATTAGATAATATNTTAAAAGTTATAACTCATTTATCACCACAAATTCAA
GGTTTATGCACTGGTTCGGGATNTGACGAACAAAAAATCATGGACTACTTGAAAATGTCA
ACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGANTCGTCGTTATCATTCAAAT
GCTATTACAAAATCTTGGTTCATTGCATACATGTGGTGTATCATTTATTTAGA
Length of connected seq. 703
Full length Seq ID -
Full length Seq. -
Length of full length seq. -