NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF253
Library SH
(Link to library)
Clone ID SHF253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHF253 (SHF253Q) /CSM/SH/SHF2-C/SHF253Q.Seq.d/
XXXXXXXXXXCAAATAAGTGGTGNTGCAANTGGAGGCAAATAGTGGGCGNTGCAGNCTGG
AGCAAATAGTGGTGNTGCAACTGGTGCAAATAGTGNAAACAANGCCGCTGTAACTGNTGC
TGCAAATGGAAATAATGGCGNTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGGGCNGCNACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAA
TGCCGCTGCAACTGGTGCTGCAAATGGNAATAATGGCGCTGCAGCTGGAGCAAATAGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAG
TGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGNTGCAAATAGTGGCGCTGCNNC
TGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCC
NAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCAGCAACCGCAGCATCAAC
TACAGGCAGAAACCCAAGAAATCCCACAAGTAGAGCTCCAACGGTCACACCAACGC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---isgxaxggk*WAXQXGANSGXATGANSXNXAAVTXAANGNNGXAAGANSGAATAANS
GAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAATAANSG
AAAGANSGAATXANSGAAXAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAATAASTT
GRNPRNPTSRAPTVTPT
Translated Amino Acid sequence (All Frames) 
Frame A:
---k*vvxqxeansgrcxleqivvxqlvqivxtxpl*lxlqmeimaxqleqivvpqllqi
vgxxllqivvpqllqieetmplqlvlqmximalqleqivvpqllqivvlqivvlqllqiv
vlqleqivvlqlxqivalxllqvvemvqvvlqtlvq**lxmikmflhyrtlmlqqpqhql
qaetqeipqvelqrshqr


Frame B:
---nkwxcxwrqivgxaxwsk*wxcnwck*xkqxrcnxcckwk*wrcswsk*wcrncck*
wgxxcck*wcrncck*rkqcrcnwcckwx*wrcswsk*wcrncck*wcck*wccncck*w
ccswsk*wccnxck*wrcxcckwwkwckwcckpwfnsnsx*skcfsiiel*ccsnrsiny
rqkpkkshk*ssnghtn


Frame C:
---isgxaxggk*WAXQXGANSGXATGANSXNXAAVTXAANGNNGXAAGANSGAATAANS
GAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAATAANSG
AAAGANSGAATXANSGAAXAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAATAASTT
GRNPRNPTSRAPTVTPT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF253 (SHF253Q) /CSM/SH/SHF2-C/SHF253Q.Seq.d/                       1066   0.0
SSD263 (SSD263Q) /CSM/SS/SSD2-C/SSD263Q.Seq.d/                        991   0.0
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        991   0.0
SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                        991   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                        991   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                        991   0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/                        991   0.0
SHB246 (SHB246Q) /CSM/SH/SHB2-B/SHB246Q.Seq.d/                        991   0.0
SHA456 (SHA456Q) /CSM/SH/SHA4-C/SHA456Q.Seq.d/                        991   0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/                        991   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA972875|CA972875.1 AGENCOURT_10764708 Wellcome CRC pSK egg Xenopus laevis cDNA cloneIMAGE:6324829 5', mRNA sequence.    46   0.89   1
AQ749675|AQ749675.1 HS_5576_A1_D08_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=1152 Col=15 Row=G, DNA sequence.    46   0.89   1
BC082626|BC082626.1 Xenopus laevis hypothetical LOC494656, mRNA (cDNA clone MGC:80488 IMAGE:5156662), complete cds.    46   0.89   1
CK575717|CK575717.1 IST_WI5_8840 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to T06E4.10, mRNA sequence.    34   2.6    3
AC156012|AC156012.19 Medicago truncatula clone mth2-168l11, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44   3.5    1
CP000150|CP000150.1 Burkholderia sp. 383 chromosome 3, complete sequence.    44   3.5    1
AC139748|AC139748.11 Medicago truncatula clone mth2-15o24, complete sequence.    44   3.5    1
AC127682|AC127682.4 Mus musculus BAC clone RP24-170O17 from 8, complete sequence.    32   6.4    2
dna update 2006. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    75   1e-12
protein update 2009. 1.16
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHF253 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHF253Z
3' end seq. 
>SHF253Z.Seq
NNNNNNNNNNCAAATAAGTGGTGNTGCAANTGGAGGCAAATAGTGGGCGNTGCAGNCTGG
AGCAAATAGTGGTGNTGCAACTGGTGCAAATAGTGNAAACAANGCCGCTGTAACTGNTGC
TGCAAATGGAAATAATGGCGNTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGGGCNGCNACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAA
TGCCGCTGCAACTGGTGCTGCAAATGGNAATAATGGCGCTGCAGCTGGAGCAAATAGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAG
TGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGNTGCAAATAGTGGCGCTGCNNC
TGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCC
NAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCAGCAACCGCAGCATCAAC
TACAGGCAGAAACCCAAGAAATCCCACAAGTAGAGCTCCAACGGTCACACCAACGC
Length of 3' end seq. 596
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -