>SHF244 (SHF244Q) /CSM/SH/SHF2-B/SHF244Q.Seq.d/
GTGTGGGTGAAGATAGAAATAATAATAAATAAATAACATACAATGTATTATTCATCATCT
AAACCAATTAAAAAGAAACCAAATACAGGTATAAGTGAATTTAATCCAACTCAATCACAA
ATTCAACAACAATCTTGTAATTACAAGATAACACCAACTTATGATCTACCATTCATATTA
ACACAAGCAATAAATGATGAGAATCAACAACATCAAATAGAACAAGATTTAACTGGTTCT
TTATCATCTCGTGATGGTACTTGTTTTATCATTTATTCAAATGAATTATTTATTTGGACA
ATTGATAAACCACAATATTGTGATAGAATTGAATTACCAATTAAACAAAATATAACAAGA
CAACATATTGTAGTTTATAAAAATAAATCATCAAGTGAAAGATTTTCAGTCTTTTTATGT
TCACCATTGACTGGTTATATTAGATTTTGGGGAAACAGTTCAAAACCAAATGTATCTCAA
GATTTACCATTGGAAAATCCAGGTAATAATAATAACTTTAAAATATTCATCACTGAATGT
CAACCATTTGGTGTCATCGTTGGTAATTCTTTAGGTTCAATCTATTTAGTTAGTGTAAAG
AATAATAATAATTTAATCTCTAAAAAGATTAATAAATCACAAGGXXXXXXXXXX

vwvkieiiink*HTMYYSSSKPIKKKPNTGISEFNPTQSQIQQQSCNYKITPTYDLPFIL
TQAINDENQQHQIEQDLTGSLSSRDGTCFIIYSNELFIWTIDKPQYCDRIELPIKQNITR
QHIVVYKNKSSSERFSVFLCSPLTGYIRFWGNSSKPNVSQDLPLENPGNNNNFKIFITEC
QPFGVIVGNSLGSIYLVSVKNNNNLISKKINKSQ---

Frame A:
vwvkieiiink*HTMYYSSSKPIKKKPNTGISEFNPTQSQIQQQSCNYKITPTYDLPFIL
TQAINDENQQHQIEQDLTGSLSSRDGTCFIIYSNELFIWTIDKPQYCDRIELPIKQNITR
QHIVVYKNKSSSERFSVFLCSPLTGYIRFWGNSSKPNVSQDLPLENPGNNNNFKIFITEC
QPFGVIVGNSLGSIYLVSVKNNNNLISKKINKSQ---


Frame B:
cg*r*k***inniqciihhlnqlkrnqiqv*vnliqlnhkfnnnlvitr*hqlmiyhsy*
hkq*mmrinnik*nki*lvlyhlvmvlvlsfiqmnylfgqlinhnivielnyqlnki*qd
nil*fikinhqvkdfqsfyvhh*lvildfgetvqnqmylkiyhwkiqviiitlkysslnv
nhlvsslvil*vqsi*lv*riiii*slkrlinhk---


Frame C:
vgedrnnnk*itynvlfii*tn*ketkyryk*i*snsitnsttil*lqdntnl*stihin
tsnk**esttsnrtrfnwffiis*wylfyhlfk*iiyldn**ttil**n*itn*tkynkt
tycsl*k*iik*kifslfmftidwly*ilgkqfktkcisrftigksr****l*nihh*ms
tiwchrw*ffrfnlfs*cke***fnl*kd**it---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF244 (SHF244Q) /CSM/SH/SHF2-B/SHF244Q.Seq.d/                       1277   0.0
AHI861 (AHI861Q) /CSM/AH/AHI8-C/AHI861Q.Seq.d/                       1277   0.0
AHQ705 (AHQ705Q) /CSM/AH/AHQ7-A/AHQ705Q.Seq.d/                       1273   0.0
VHF334 (VHF334Q) /CSM/VH/VHF3-B/VHF334Q.Seq.d/                       1269   0.0
VHH168 (VHH168Q) /CSM/VH/VHH1-C/VHH168Q.Seq.d/                       1239   0.0
SHE445 (SHE445Q) /CSM/SH/SHE4-B/SHE445Q.Seq.d/                       1235   0.0
VHH549 (VHH549Q) /CSM/VH/VHH5-C/VHH549Q.Seq.d/                       1185   0.0
SHL824 (SHL824Q) /CSM/SH/SHL8-A/SHL824Q.Seq.d/                       1183   0.0
CHK886 (CHK886Q) /CSM/CH/CHK8-D/CHK886Q.Seq.d/                       1183   0.0
VHM864 (VHM864Q) /CSM/VH/VHM8-C/VHM864Q.Seq.d/                       1181   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence.    40   4e-06  9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   4e-05  9
AX349037|AX349037.1 Sequence 495 from Patent WO0202807.            38   2e-04  4
AX344514|AX344514.1 Sequence 361 from Patent WO0200926.            38   2e-04  4
AX252146|AX252146.1 Sequence 407 from Patent WO0168911.            38   2e-04  4
BD460610|BD460610.1 Diagnosis of Diseases Associated with Cell Cycle.    38   2e-04  4
BD452532|BD452532.1 Diagnosis of Diseases Associated with Cell Cycle.    38   2e-04  4
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    32   2e-04  8
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    46   3e-04  13
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   4e-04  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000961_954(CP000961|pid:none) Shewanella woodyi ATCC 51908, co...    35   2.4
CP000724_174(CP000724|pid:none) Alkaliphilus metalliredigens QYM...    34   4.1
CP001291_4072(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    33   9.1
(P25453) RecName: Full=Meiotic recombination protein DMC1;  &A38...    33   9.1

 psg: 0.47  gvh: 0.34  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SHF244 is cyt

>SHF244F.Seq
GTGTGGGTGAAGATAGAAATAATAATAAATAAATAACATACAATGTATTATTCATCATCT
AAACCAATTAAAAAGAAACCAAATACAGGTATAAGTGAATTTAATCCAACTCAATCACAA
ATTCAACAACAATCTTGTAATTACAAGATAACACCAACTTATGATCTACCATTCATATTA
ACACAAGCAATAAATGATGAGAATCAACAACATCAAATAGAACAAGATTTAACTGGTTCT
TTATCATCTCGTGATGGTACTTGTTTTATCATTTATTCAAATGAATTATTTATTTGGACA
ATTGATAAACCACAATATTGTGATAGAATTGAATTACCAATTAAACAAAATATAACAAGA
CAACATATTGTAGTTTATAAAAATAAATCATCAAGTGAAAGATTTTCAGTCTTTTTATGT
TCACCATTGACTGGTTATATTAGATTTTGGGGAAACAGTTCAAAACCAAATGTATCTCAA
GATTTACCATTGGAAAATCCAGGTAATAATAATAACTTTAAAATATTCATCACTGAATGT
CAACCATTTGGTGTCATCGTTGGTAATTCTTTAGGTTCAATCTATTTAGTTAGTGTAAAG
AATAATAATAATTTAATCTCTAAAAAGATTAATAAATCACAAGGNNNNNNNNNN