>SHF237 (SHF237Q) /CSM/SH/SHF2-B/SHF237Q.Seq.d/
ACAATTTATAAATTTGTATTTATAAATAAATATATATATAAAAAATGGTTAAAAATATAA
AAATATTTTTATCATTATTTTTTGTAGTTGTATTAGGTTTATTAGCTACAACAGCAAATT
CAATGGTTATTGGTATTGATTTAGGTTCACAAACATTTAAAGTATCATTAATTAAACCAG
GTGCATTTGAAACCGTTTTAAATGAACAATCTGGTAGAAAAACAATTTCATCTGTTGGTT
GGTTTAAAGATGAAAGATTATTTTCTTCTGATTCATTTAGTGTTTGGGCTAGAAATCCAA
AACAAAATTATAATTTAATTCAAGCATTTTTAGGTATTAAATATAAAGAAGGATTAGTTG
AAGAGATTAGTAATGGATTACCATTAGGATTTAAGGTAAAGAATGATACTGTTAGAAATA
CAGTTTCAATTGTATACGATGATGATACCAATTATTCAGCAGAGGAATTGACAGGTATGT
TATTAAGAAGAGTTAAGGATATGGCATCGTCATATGCAGGTTCATCAATCAAGGATTGTG
CAATCACAATTCCACCTTACTTTACACAACAACAAAGACAAGCATTATTGGATGCTGCTC
AATTXXXXXXXXXXCAATTAAATATAATGGTTGTGTTGAACCATTATCAAAGGAATTAAG
TCAAGAAAGTAATGATAGAATTAATAAATTGGATCAAGTTGATAGAATTTTAAGAGAATT
AAGACAAGAGAGAAATAATTTAGAATCATTTATTTATGAAACTAAAGATAAATTGGAATC
TAATGAAGAATATTTGAAATGTTCAACTCAACAAGAGAGAGATCAATTGGTTGAAGAATT
GGATAAAACATCTGCATGGTTATCGGATGCTTTGGATAATGATAATACTGAAACCGAGGA
ATACCGTAAACAATTGAAAGATATTAAAAAGAAAGCTGACAAAATCGTTAACCGTGTCTC
TCAATACCAATTGGTACCTGTCGCATTGGAAGAGTTGGAAGACACTGTTGATAAAGTTAA
ACCAATGTTTGAAATCGCTTCAAAGGATTTAAATGTAACCGCTGAGGAATTAAAAGAAAC
TACTGATAAAATTCAATCCGTTTCCGATTGGGTACAAGAAAAGAAATCTGAATTCAAATT
AGCTGATTATTCAAAAGATTTACAAACTTCCTCTTTTGATATTAAATTTAAACTTTATGA
TTTAGAAAGAACAATTAAAGAAATTTTAAAAAAGAAAAAGAAACCTGTTAA

nl*iciyk*iyi*KMVKNIKIFLSLFFVVVLGLLATTANSMVIGIDLGSQTFKVSLIKPG
AFETVLNEQSGRKTISSVGWFKDERLFSSDSFSVWARNPKQNYNLIQAFLGIKYKEGLVE
EISNGLPLGFKVKNDTVRNTVSIVYDDDTNYSAEELTGMLLRRVKDMASSYAGSSIKDCA
ITIPPYFTQQQRQALLDAAQ---

---IKYNGCVEPLSKELSQESNDRINKLDQVDRILRELRQERNNLESFIYETKDKLESNE
EYLKCSTQQERDQLVEELDKTSAWLSDALDNDNTETEEYRKQLKDIKKKADKIVNRVSQY
QLVPVALEELEDTVDKVKPMFEIASKDLNVTAEELKETTDKIQSVSDWVQEKKSEFKLAD
YSKDLQTSSFDIKFKLYDLERTIKEILKKKKKPV

Frame A:
tiykfvfinkyiykkwlki*kyfyhyfl*ly*vy*lqqqiqwllvli*vhkhlkyh*lnq
vhlkpf*mnnlvekqfhllvglkmkdyfllihlvfgleiqnkiii*fkhf*vlnikkd*l
krlvmdyh*dlr*rmilleiqfqlytmmipiiqqrn*qvcy*eelriwhrhmqvhqsriv
qsqfhltlhnnkdkhywmlln---

---qlnimvvlnhyqrn*vkkvmielinwiklief*en*dkreii*nhlfmklkinwnlm
kni*nvqlnkreinwlknwikhlhgyrmlwimiilkprntvnn*kilkrkltksltvsln
tnwylshwkswktlliklnqclkslqri*m*plrn*kkllikfnpfpigykkrnlnsn*l
iiqkiyklpllilnlnfmi*keqlkkf*krkrnll

Frame B:
qfinlyl*iniyikng*kyknifiiifcscirfisynskfngywy*frftni*siin*tr
ci*nrfk*tiw*knnficwlv*r*kiiff*fi*clg*ksktkl*fnssifry*i*rris*
rd**witiri*gke*yc*kysfncir**yqlfsrgidryvikks*gygivicrfinqglc
nhnstllytttktsiigccsi---

---n*i*wlc*tiikgiksrk***n**igss**nfkriktrek*friiyl*n*r*igi**
rifemfnstrersig*rig*nicmvigcfg***y*nrgip*tiery*kes*qnr*pclsi
pigtcrigrvgrhc**s*tnv*nrfkgfkcnr*gikrny**nsirfrlgtrkei*iqis*
lfkrftnflf*y*i*tl*frknn*rnfkkeketc*

Frame C:
nl*iciyk*iyi*KMVKNIKIFLSLFFVVVLGLLATTANSMVIGIDLGSQTFKVSLIKPG
AFETVLNEQSGRKTISSVGWFKDERLFSSDSFSVWARNPKQNYNLIQAFLGIKYKEGLVE
EISNGLPLGFKVKNDTVRNTVSIVYDDDTNYSAEELTGMLLRRVKDMASSYAGSSIKDCA
ITIPPYFTQQQRQALLDAAQ---

---IKYNGCVEPLSKELSQESNDRINKLDQVDRILRELRQERNNLESFIYETKDKLESNE
EYLKCSTQQERDQLVEELDKTSAWLSDALDNDNTETEEYRKQLKDIKKKADKIVNRVSQY
QLVPVALEELEDTVDKVKPMFEIASKDLNVTAEELKETTDKIQSVSDWVQEKKSEFKLAD
YSKDLQTSSFDIKFKLYDLERTIKEILKKKKKPV

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF237 (SHF237Q) /CSM/SH/SHF2-B/SHF237Q.Seq.d/                       2196   0.0
SHC629 (SHC629Q) /CSM/SH/SHC6-B/SHC629Q.Seq.d/                       1168   0.0
CHN872 (CHN872Q) /CSM/CH/CHN8-C/CHN872Q.Seq.d/                       1168   0.0
AHR122 (AHR122Q) /CSM/AH/AHR1-A/AHR122Q.Seq.d/                       1168   0.0
AHO795 (AHO795Q) /CSM/AH/AHO7-D/AHO795Q.Seq.d/                       1168   0.0
AHO762 (AHO762Q) /CSM/AH/AHO7-C/AHO762Q.Seq.d/                       1168   0.0
AHI423 (AHI423Q) /CSM/AH/AHI4-A/AHI423Q.Seq.d/                       1168   0.0
AHF613 (AHF613Q) /CSM/AH/AHF6-A/AHF613Q.Seq.d/                       1168   0.0
AHF505 (AHF505Q) /CSM/AH/AHF5-A/AHF505Q.Seq.d/                       1160   0.0
SHG291 (SHG291Q) /CSM/SH/SHG2-D/SHG291Q.Seq.d/                       1156   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1168   0.0    1
AF438327|AF438327.1 Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced.    40   0.055  8
AX344571|AX344571.1 Sequence 22 from Patent WO0200932.             50   0.12   1
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC.    50   0.12   1
AC150711|AC150711.3 Bos taurus clone CH240-220F6, WORKING DRAFT SEQUENCE, 3 ordered pieces.    40   0.14   6
AL353733|AL353733.14 Human DNA sequence from clone RP11-143N16 on chromosome 9.    36   0.31   4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.35   10
CT030019|CT030019.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-202M23.    36   0.45   7
CE670912|CE670912.1 tigr-gss-dog-17000329345619 Dog Library Canis familiaris genomic, genomic survey sequence.    48   0.48   1
AC093112|AC093112.4 Homo sapiens BAC clone RP11-621K10 from 2, complete sequence.    48   0.48   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047807_1(BC047807|pid:none) Danio rerio hypoxia up-regulated 1...    98   7e-19
BC071372_1(BC071372|pid:none) Danio rerio hypoxia up-regulated 1...    98   7e-19
BC043837_1(BC043837|pid:none) Xenopus laevis similar to calcium ...    95   6e-18
BC078088_1(BC078088|pid:none) Xenopus laevis similar to calcium ...    95   6e-18
BC093532_1(BC093532|pid:none) Xenopus laevis similar to calcium ...    95   6e-18
BC121233_1(BC121233|pid:none) Xenopus tropicalis hypoxia up-regu...    91   8e-17
AP003983_11(AP003983|pid:none) Oryza sativa Japonica Group genom...    88   7e-16
BT055084_1(BT055084|pid:none) Zea mays full-length cDNA clone ZM...    86   3e-15
AY051008_1(AY051008|pid:none) Arabidopsis thaliana putative HSP ...    85   4e-15
AK229980_1(AK229980|pid:none) Arabidopsis thaliana mRNA for HSP ...    85   6e-15

 psg: 0.99  gvh: 0.68  alm: 0.42  top: 0.33  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.11  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: extracellular, including cell wall
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SHF237 is exc

>SHF237F.Seq
ACAATTTATAAATTTGTATTTATAAATAAATATATATATAAAAAATGGTTAAAAATATAA
AAATATTTTTATCATTATTTTTTGTAGTTGTATTAGGTTTATTAGCTACAACAGCAAATT
CAATGGTTATTGGTATTGATTTAGGTTCACAAACATTTAAAGTATCATTAATTAAACCAG
GTGCATTTGAAACCGTTTTAAATGAACAATCTGGTAGAAAAACAATTTCATCTGTTGGTT
GGTTTAAAGATGAAAGATTATTTTCTTCTGATTCATTTAGTGTTTGGGCTAGAAATCCAA
AACAAAATTATAATTTAATTCAAGCATTTTTAGGTATTAAATATAAAGAAGGATTAGTTG
AAGAGATTAGTAATGGATTACCATTAGGATTTAAGGTAAAGAATGATACTGTTAGAAATA
CAGTTTCAATTGTATACGATGATGATACCAATTATTCAGCAGAGGAATTGACAGGTATGT
TATTAAGAAGAGTTAAGGATATGGCATCGTCATATGCAGGTTCATCAATCAAGGATTGTG
CAATCACAATTCCACCTTACTTTACACAACAACAAAGACAAGCATTATTGGATGCTGCTC
AATTNNNNNNNNNN

>SHF237Z.Seq
NNNNNNNNNNCAATTAAATATAATGGTTGTGTTGAACCATTATCAAAGGAATTAAGTCAA
GAAAGTAATGATAGAATTAATAAATTGGATCAAGTTGATAGAATTTTAAGAGAATTAAGA
CAAGAGAGAAATAATTTAGAATCATTTATTTATGAAACTAAAGATAAATTGGAATCTAAT
GAAGAATATTTGAAATGTTCAACTCAACAAGAGAGAGATCAATTGGTTGAAGAATTGGAT
AAAACATCTGCATGGTTATCGGATGCTTTGGATAATGATAATACTGAAACCGAGGAATAC
CGTAAACAATTGAAAGATATTAAAAAGAAAGCTGACAAAATCGTTAACCGTGTCTCTCAA
TACCAATTGGTACCTGTCGCATTGGAAGAGTTGGAAGACACTGTTGATAAAGTTAAACCA
ATGTTTGAAATCGCTTCAAAGGATTTAAATGTAACCGCTGAGGAATTAAAAGAAACTACT
GATAAAATTCAATCCGTTTCCGATTGGGTACAAGAAAAGAAATCTGAATTCAAATTAGCT
GATTATTCAAAAGATTTACAAACTTCCTCTTTTGATATTAAATTTAAACTTTATGATTTA
GAAAGAACAATTAAAGAAATTTTAAAAAAGAAAAAGAAACCTGTTAA

>SHF237P.Seq
ACAATTTATAAATTTGTATTTATAAATAAATATATATATAAAAAATGGTTAAAAATATAA
AAATATTTTTATCATTATTTTTTGTAGTTGTATTAGGTTTATTAGCTACAACAGCAAATT
CAATGGTTATTGGTATTGATTTAGGTTCACAAACATTTAAAGTATCATTAATTAAACCAG
GTGCATTTGAAACCGTTTTAAATGAACAATCTGGTAGAAAAACAATTTCATCTGTTGGTT
GGTTTAAAGATGAAAGATTATTTTCTTCTGATTCATTTAGTGTTTGGGCTAGAAATCCAA
AACAAAATTATAATTTAATTCAAGCATTTTTAGGTATTAAATATAAAGAAGGATTAGTTG
AAGAGATTAGTAATGGATTACCATTAGGATTTAAGGTAAAGAATGATACTGTTAGAAATA
CAGTTTCAATTGTATACGATGATGATACCAATTATTCAGCAGAGGAATTGACAGGTATGT
TATTAAGAAGAGTTAAGGATATGGCATCGTCATATGCAGGTTCATCAATCAAGGATTGTG
CAATCACAATTCCACCTTACTTTACACAACAACAAAGACAAGCATTATTGGATGCTGCTC
AATT----------CAATTAAATATAATGGTTGTGTTGAACCATTATCAAAGGAATTAAG
TCAAGAAAGTAATGATAGAATTAATAAATTGGATCAAGTTGATAGAATTTTAAGAGAATT
AAGACAAGAGAGAAATAATTTAGAATCATTTATTTATGAAACTAAAGATAAATTGGAATC
TAATGAAGAATATTTGAAATGTTCAACTCAACAAGAGAGAGATCAATTGGTTGAAGAATT
GGATAAAACATCTGCATGGTTATCGGATGCTTTGGATAATGATAATACTGAAACCGAGGA
ATACCGTAAACAATTGAAAGATATTAAAAAGAAAGCTGACAAAATCGTTAACCGTGTCTC
TCAATACCAATTGGTACCTGTCGCATTGGAAGAGTTGGAAGACACTGTTGATAAAGTTAA
ACCAATGTTTGAAATCGCTTCAAAGGATTTAAATGTAACCGCTGAGGAATTAAAAGAAAC
TACTGATAAAATTCAATCCGTTTCCGATTGGGTACAAGAAAAGAAATCTGAATTCAAATT
AGCTGATTATTCAAAAGATTTACAAACTTCCTCTTTTGATATTAAATTTAAACTTTATGA
TTTAGAAAGAACAATTAAAGAAATTTTAAAAAAGAAAAAGAAACCTGTTAA