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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHF235
Library SH
(Link to library)
Clone ID SHF235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHF235P
(Link to Original site)
Representative DNA sequence 
>SHF235 (SHF235Q) /CSM/SH/SHF2-B/SHF235Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGXXXXXXXXXXTAACTGAAGCNGTCAGAAGAAGACCATACAGTGTAGTATTG
TTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGAT
GAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATT
ATGACCTCAAATTTAGGTAGTCAATACATCNTTGGTGAACAAGCAAACAAAGAAGGTGGT
AACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTC
CGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAA
AACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAA
AATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGAT
CCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTT
AGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAA
GATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCT
CCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAGATAAAAAGATAAGATAAAATNCT
ATNCTGTTTTTTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN
LGSQYIXGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS
IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI
LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkdkkir*nxxlff
*
Translated Amino Acid sequence (All Frames) 
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
qpk---

---*lkxseedhtv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pq
i*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfi
vlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvns
slvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkkllnkkkikr*dkxlxcf
fk

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
nq---

---n*sxqkktiqcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlk
fr*sihxw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*
yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**th
pww*ikrksrcccq*krsssql*yyrfktttttssfsnqktkny*ikkr*kdkikxyxvf
lk

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN
LGSQYIXGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS
IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI
LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkdkkir*nxxlff
*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1269   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1269   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1269   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1269   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1269   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1269   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1269   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1269   0.0
SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/                       1269   0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/                       1269   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence.    80   1e-12  2
BH165696|BH165696.1 ENTTP28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH164508|BH164508.1 ENTTD23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH163900|BH163900.1 ENTSJ80TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH148907|BH148907.1 ENTPE41TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH163033|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH137018|BH137018.1 ENTOU28TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH161826|BH161826.1 ENTRN55TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH131396|BH131396.1 ENTOS96TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
BH133742|BH133742.1 ENTNM81TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   5e-07  1
dna update 2006. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   214   4e-54
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   214   7e-54
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   214   7e-54
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   214   7e-54
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   213   9e-54
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   213   1e-53
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   212   2e-53
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   212   2e-53
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   212   2e-53
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   212   2e-53
protein update 2009. 4.18
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 44.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHF235 is nuc
5' end seq. ID SHF235F
5' end seq. 
>SHF235F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGNNNNNNNNNN
Length of 5' end seq. 559
3' end seq. ID SHF235Z
3' end seq. 
>SHF235Z.Seq
NNNNNNNNNNTAACTGAAGCNGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAA
GTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGT
CTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCA
AATTTAGGTAGTCAATACATCNTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCT
TTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAG
TTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCAT
AGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCT
TTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTT
GGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTC
ATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCAT
CTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAA
AAACAAAAAACTATTAAATAAAAAAAAGATAAAAAGATAAGATAAAATNCTATNCTGTTT
TTTTAAAA
Length of 3' end seq. 728
Connected seq. ID SHF235P
Connected seq. 
>SHF235P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAG----------TAACTGAAGCNGTCAGAAGAAGACCATACAGTGTAGTATTG
TTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGAT
GAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATT
ATGACCTCAAATTTAGGTAGTCAATACATCNTTGGTGAACAAGCAAACAAAGAAGGTGGT
AACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTC
CGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAA
AACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAA
AATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGAT
CCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTT
AGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAA
GATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCT
CCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAGATAAAAAGATAAGATAAAATNCT
ATNCTGTTTTTTTAAAA
Length of connected seq. 1267
Full length Seq ID -
Full length Seq. -
Length of full length seq. -