>SHF202 (SHF202Q) /CSM/SH/SHF2-A/SHF202Q.Seq.d/
XXXXXXXXXXTCGTCTTCCAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAA
GTAAACTAACAGAAGATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGT
CATTGGAGAAGTGGTTAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCA
CAAGACAACNTGGTGAAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGA
AAGACACAGTTTTATCAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAG
AAACTANACAAGTCAATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAAT
TCCAAGCTAAAGAATTGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATA
TTTTATCAGGAAAGAAAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAG
TAAAAATGATCCTTCAAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAA
CTGATGAAGATATGTTC

---RLPSQAMPSKQLIDVLSKLTEDRRNEVYVISGRDRSSLEKWLGHLPIGMSCEHGVFT
RQXGENQPWTESPNAEVQWKDTVLSIMQDFEDRTPGSMTETXQVNITWHYRNADPDFGQF
QAKELIAQLRSVANKYPLDILSGKKAIEVKPIGINKGEIVKMILQKIDADFILCIGDDKT
DEDMF

Frame A:
---RLPSQAMPSKQLIDVLSKLTEDRRNEVYVISGRDRSSLEKWLGHLPIGMSCEHGVFT
RQXGENQPWTESPNAEVQWKDTVLSIMQDFEDRTPGSMTETXQVNITWHYRNADPDFGQF
QAKELIAQLRSVANKYPLDILSGKKAIEVKPIGINKGEIVKMILQKIDADFILCIGDDKT
DEDMF


Frame B:
---vfqvkqchqsn*lmf*vn*qkieemkft*sveeivrhwrsg*viyqlvclvnmafsq
dnxvkinhglkvqmqkfngktqfyq*ckilkiehqvq*qklxksishgiiemliqtlvns
klkn*lhnfvqsqinthwifyqerkqlklnq*vsikvk**k*sfkrlmqisyfvlvmikl
mkic


Frame C:
---sskssnaikain*cfk*tnrr*kk*slrnqwkrsfvigevvrsftnwyvl*twrfhk
ttw*kstmd*kskcrssmerhsfinnarf*r*ntrfndrnxtsqyhmal*kc*srlwsip
s*ridcttsfsrk*ipigyfirkesn*s*tnryq*r*nskndpskd*crfhtlyw***n*
*ryv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF202 (SHF202Q) /CSM/SH/SHF2-A/SHF202Q.Seq.d/                       1072   0.0
CHL374 (CHL374Q) /CSM/CH/CHL3-D/CHL374Q.Seq.d/                       1070   0.0
AHB860 (AHB860Q) /CSM/AH/AHB8-C/AHB860Q.Seq.d/                       1070   0.0
SHE467 (SHE467Q) /CSM/SH/SHE4-C/SHE467Q.Seq.d/                       1065   0.0
CHR107 (CHR107Q) /CSM/CH/CHR1-A/CHR107Q.Seq.d/                       1063   0.0
CHG693 (CHG693Q) /CSM/CH/CHG6-D/CHG693Q.Seq.d/                       1063   0.0
AHQ864 (AHQ864Q) /CSM/AH/AHQ8-C/AHQ864Q.Seq.d/                       1063   0.0
AHD633 (AHD633Q) /CSM/AH/AHD6-B/AHD633Q.Seq.d/                       1063   0.0
VHA432 (VHA432Q) /CSM/VH/VHA4-B/VHA432Q.Seq.d/                       1061   0.0
CHP648 (CHP648Q) /CSM/CH/CHP6-B/CHP648Q.Seq.d/                       1061   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CT573028|CT573028.11 M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3.    56   9e-04  1
CF609616|CF609616.1 INFIO01_000425 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    40   0.004  3
AF208030|AF208030.1 Zygosaccharomyces rouxii trehalose-6-phosphate phosphatase (TPS2) mRNA, complete cds.    36   0.007  3
CO364472|CO364472.1 RTK1_15_H07.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_15_H07_A029 5', mRNA sequence.    38   0.009  3
AJ242743|AJ242743.1 Schizosaccharomyces pombe tpp1+ gene for trehalose-6P phosphatase,  exon 1.    52   0.013  1
Z97209|Z97209.1 S.pombe chromosome I cosmid c19G12.                52   0.013  1
D89225|D89225.1 Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1342.    52   0.013  1
L40359|L40359.1 Schizosaccharomyces pombe phosphatidate phosphatase (TPP) mRNA, partial cds.    52   0.013  1
AB013395|AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.    46   0.56   2
BB919173|BB919173.1 Trifolium pratense cDNA clone:RCE25013, 5' end.    46   0.83   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NU9) RecName: Full=Alpha,alpha-trehalose-phosphate synthase ...   367   e-101
EU399552_1(EU399552|pid:none) Cryptococcus gattii isolate R265TP...   166   3e-40
AE017342_262(AE017342|pid:none) Cryptococcus neoformans var. neo...   165   8e-40
DQ407640_1(DQ407640|pid:none) Acanthamoeba castellanii trehalose...   165   8e-40
CP000592_242(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   160   3e-38
CR382130_585(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   159   3e-38
CR382139_531(CR382139|pid:none) Debaryomyces hansenii strain CBS...   159   4e-38
CP000500_340(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   158   8e-38
CR380953_221(CR380953|pid:none) Candida glabrata strain CBS138 c...   155   6e-37
CP000504_1318(CP000504|pid:none) Pyrobaculum islandicum DSM 4184...   155   6e-37

 psg: 0.65  gvh: 0.44  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for SHF202 is cyt

>SHF202Z.Seq
NNNNNNNNNNTCGTCTTCCAAGTCAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAA
GTAAACTAACAGAAGATAGAAGAAATGAAGTTTACGTAATCAGTGGAAGAGATCGTTCGT
CATTGGAGAAGTGGTTAGGTCATTTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCA
CAAGACAACNTGGTGAAAATCAACCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGA
AAGACACAGTTTTATCAATAATGCAAGATTTTGAAGATAGAACACCAGGTTCAATGACAG
AAACTANACAAGTCAATATCACATGGCATTATAGAAATGCTGATCCAGACTTTGGTCAAT
TCCAAGCTAAAGAATTGATTGCACAACTTCGTTCAGTCGCAAATAAATACCCATTGGATA
TTTTATCAGGAAAGAAAGCAATTGAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAG
TAAAAATGATCCTTCAAAAGATTGATGCAGATTTCATACTTTGTATTGGTGATGATAAAA
CTGATGAAGATATGTTC