>AFJ322 (AFJ322Q) /CSM/AF/AFJ3-A/AFJ322Q.Seq.d/
XXXXXXXXXXAATCACCCGTTTCTTCAATACACTTGGTATCTACATGATCTTTAGTTTCT
TGTTATATTTCGCCACTGATATCATTGGTCAAACGAATTTAATGACAAATAGTTATATCA
TAGTGGTGTTGGTCATGTGTTCCATACCCGCTTCAATCGCTGGTGGTTATTTAGCTGATT
TTTACAGTACAAAACTATTAGTATACATTAGTAGTGGTATTCAAGTTGTGGCTATAGCTT
TATTAATCACAATTTCATTCAATCCTTCATTTGCTGGTTTGTTGATTCTATCAGGTTTCT
TAGGTGTTGGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATTCATTAC
CAAATAAAACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTCCAACTG
TAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTACCCTTGAAAATG
GTACTAAAATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCATTTTGGT
TCCTTTTAGCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAAATTGTT
CTAGAAAAGATCAACAACAACAAACTAAAATCAACAATCACAAAATCAACAACAATTACA
ACCAACTAATAATGGTGCNATTTAAAAATCAAATAAGGTAAAGAAAACCCAAAATAGAAC
CAGTTTA

---ITRFFNTLGIYMIFSFLLYFATDIIGQTNLMTNSYIIVVLVMCSIPASIAGGYLADF
YSTKLLVYISSGIQVVAIALLITISFNPSFAGLLILSGFLGVGYGAYQCVDWALALHSLP
NKTIGKDMGIWHISFIAPTVVAPAITGSILQATQITLENGTKISSQYGYAIVFGISSFWF
LLATIFIYPMKISAIPKNCSRKDQQQQTKINNHKINNNYNQLIMVXFKNQIR*rkpkiep
v

Frame A:
---ITRFFNTLGIYMIFSFLLYFATDIIGQTNLMTNSYIIVVLVMCSIPASIAGGYLADF
YSTKLLVYISSGIQVVAIALLITISFNPSFAGLLILSGFLGVGYGAYQCVDWALALHSLP
NKTIGKDMGIWHISFIAPTVVAPAITGSILQATQITLENGTKISSQYGYAIVFGISSFWF
LLATIFIYPMKISAIPKNCSRKDQQQQTKINNHKINNNYNQLIMVXFKNQIR*rkpkiep
v


Frame B:
---spvssihlvst*slvscyisplislvkri**qivis*wcwscvpyplqslvvi*lif
tvqny*ytlvvvfklwl*ly*sqfhsilhllvc*fyqvs*vlvmvlinvlighwhfihyq
ikplakiwvfgisllslql*llqlslvasykllklplkmvlkflhnmvmllflvlvhfgs
f*qqslfiq*klvlfqkivlekinnnklkstitksttittn**wcxlkik*gkenpk*nq
f


Frame C:
---hpflqytwylhdl*flvifrh*yhwsnefndk*lyhsgvghvfhtrfnrwwlfs*fl
qyktisih**wysscgysfinhnfiqsficwfvdsirflrcwlwclsmc*lgigtsfitk
*nhwqrygylaylfyrsncscssyhw*hltsysnyp*kwy*nfftiwlcycfwy*filvp
fsnnlylsnen*cyskklf*krstttn*nqqsqnqqqlqptnngai*ksnkvkktqnrts
l

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/                       1187   0.0
AFJ322 (AFJ322Q) /CSM/AF/AFJ3-A/AFJ322Q.Seq.d/                       1187   0.0
SSM685 (SSM685Q) /CSM/SS/SSM6-D/SSM685Q.Seq.d/                        930   0.0
SSM658 (SSM658Q) /CSM/SS/SSM6-C/SSM658Q.Seq.d/                        728   0.0
SSJ230 (SSJ230Q) /CSM/SS/SSJ2-B/SSJ230Q.Seq.d/                        724   0.0
SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/                        597   e-170
SSL423 (SSL423Q) /CSM/SS/SSL4-A/SSL423Q.Seq.d/                        565   e-160
AFH507 (AFH507Q) /CSM/AF/AFH5-A/AFH507Q.Seq.d/                        513   e-144
AFN759 (AFN759Q) /CSM/AF/AFN7-C/AFN759Q.Seq.d/                        424   e-118
SFH450 (SFH450Q) /CSM/SF/SFH4-C/SFH450Q.Seq.d/                        347   1e-94

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC096337|AC096337.7 Rattus norvegicus clone CH230-95F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    34   0.11   8
AC122341|AC122341.3 Mus musculus BAC clone RP23-355F8 from chromosome 15, complete sequence.    38   0.19   5
CP000003|CP000003.1 Streptococcus pyogenes MGAS10394, complete genome.    40   0.55   16
AC060228|AC060228.10 Homo sapiens chromosome 4 clone RP11-922D2, WORKING DRAFT SEQUENCE, 29 unordered pieces.    32   0.55   8
AC116015|AC116015.16 Homo sapiens chromosome 11, clone RP11-356D19, complete sequence.    46   0.79   1
AC090822|AC090822.2 Homo sapiens chromosome 11 clone CTD-2341A5 map 11, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46   0.79   1
AC116018|AC116018.1 Homo sapiens chromosome 11 clone RP11-957G7 map 11, LOW-PASS SEQUENCE SAMPLING.    46   0.79   1
AQ356511|AQ356511.1 CITBI-E1-2541E23.TR CITBI-E1 Homo sapiens genomic clone 2541E23, genomic survey sequence.    46   0.79   1
BZ973314|BZ973314.1 PUGIG67TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa390L13, DNA sequence.    34   2.2    3
AC021435|AC021435.2 Mus musculus chromosome 18 clone RP22-279B10 map 18, LOW-PASS SEQUENCE SAMPLING.    44   3.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A75444(A75444) hypothetical protein - Deinococcus radiodurans (s...   111   2e-23
CP001213_42(CP001213|pid:none) Bifidobacterium animalis subsp. l...    79   1e-13
CP000474_3686(CP000474|pid:none) Arthrobacter aurescens TC1, com...    70   8e-11
AP009256_1209(AP009256|pid:none) Bifidobacterium adolescentis AT...    67   7e-10
CP000631_179(CP000631|pid:none) Agrobacterium radiobacter K84 pl...    66   1e-09
CP001341_3726(CP001341|pid:none) Arthrobacter chlorophenolicus A...    65   2e-09
CP000629_2136(CP000629|pid:none) Agrobacterium radiobacter K84 c...    64   3e-09
AE014295_428(AE014295|pid:none) Bifidobacterium longum NCC2705, ...    64   4e-09
AM711867_115(AM711867|pid:none) Clavibacter michiganensis subsp....    63   8e-09
CP000414_782(CP000414|pid:none) Leuconostoc mesenteroides subsp....    63   8e-09

 psg: 0.96  gvh: 0.68  alm: 0.24  top: 0.60  tms: 0.27  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic

>> prediction for AFJ322 is end

>AFJ322Z.Seq
----------AATCACCCGTTTCTTCAATACACTTGGTATCTACATGATCTTTAGTTTCT
TGTTATATTTCGCCACTGATATCATTGGTCAAACGAATTTAATGACAAATAGTTATATCA
TAGTGGTGTTGGTCATGTGTTCCATACCCGCTTCAATCGCTGGTGGTTATTTAGCTGATT
TTTACAGTACAAAACTATTAGTATACATTAGTAGTGGTATTCAAGTTGTGGCTATAGCTT
TATTAATCACAATTTCATTCAATCCTTCATTTGCTGGTTTGTTGATTCTATCAGGTTTCT
TAGGTGTTGGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATTCATTAC
CAAATAAAACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTCCAACTG
TAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTACCCTTGAAAATG
GTACTAAAATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCATTTTGGT
TCCTTTTAGCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAAATTGTT
CTAGAAAAGATCAACAACAACAAACTAAAATCAACAATCACAAAATCAACAACAATTACA
ACCAACTAATAATGGTGCNATTTAAAAATCAAATAAGGTAAAGAAAACCCAAAATAGAAC
CAGTTTA