>SHE841 (SHE841Q) /CSM/SH/SHE8-B/SHE841Q.Seq.d/
GTTGGCCTACTGGNAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTA
TTCAAAGNATATAATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGA
AGTTTGCTATTCATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTG
TGATTCTGGATGGACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTAT
ATCATCAATGGTTCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTC
TGAAATTGGATTTTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTT
TATAAAACATGTTAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGA
TGAAGCATGTGCAAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTAT
TAGAGAGAAATTTGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTC
ATCATTGACACCAACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTAT
TCACTATGAATTGAAXXXXXXXXXX

laywxnkihliiii*ffs*YSKXIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHC
DSGWTSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDF
IKHVKNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHS
SLTPTLQAQFGYKHVVLNRIHYEL---

Frame A:
vgllxk*nsfnnnnliffivfkxyneklllfyinfiif**sllfikrw*n*tsfnstftl
*fwmdinnerilygss*kyyiingsiikc*ikst*kiclv*nwifrtmvg*yan*n*k*f
yktc*k**n*ickwwmgne**smckfrkcn*tiikwt*iy*reiwkttrewman*siwtf
iidtnitssiwl*tcciesysl*i---


Frame B:
laywxnkihliiii*ffs*YSKXIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHC
DSGWTSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDF
IKHVKNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHS
SLTPTLQAQFGYKHVVLNRIHYEL---


Frame C:
wptgkikfi****fnffhsiqxi**ktfiily*fyyflmkfaih*kmvklnfi*fhihiv
ildghqq*tniiwvklkvlyhqwfnh*mlnqihlenlfglkldf*nnggmicqlklkmil
*nmlkmielnl*mvdg**mmkhvqv*kv*ldnyqmdinllernlennqrvdgklihldih
h*hqhyklnlvinmly*ivftmn*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL340 (SHL340Q) /CSM/SH/SHL3-B/SHL340Q.Seq.d/                        989   0.0
SHL334 (SHL334Q) /CSM/SH/SHL3-B/SHL334Q.Seq.d/                        989   0.0
SHL308 (SHL308Q) /CSM/SH/SHL3-A/SHL308Q.Seq.d/                        989   0.0
SHL251 (SHL251Q) /CSM/SH/SHL2-C/SHL251Q.Seq.d/                        989   0.0
SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/                        989   0.0
SHK566 (SHK566Q) /CSM/SH/SHK5-C/SHK566Q.Seq.d/                        989   0.0
SHK514 (SHK514Q) /CSM/SH/SHK5-A/SHK514Q.Seq.d/                        989   0.0
SHK450 (SHK450Q) /CSM/SH/SHK4-C/SHK450Q.Seq.d/                        989   0.0
SHK365 (SHK365Q) /CSM/SH/SHK3-C/SHK365Q.Seq.d/                        989   0.0
SHK266 (SHK266Q) /CSM/SH/SHK2-C/SHK266Q.Seq.d/                        989   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF445746|CF445746.1 EST682091 normalized cDNA library of onion Allium cepa cDNA clone ACAHS20, mRNA sequence.    60   1e-08  2
BQ593037|BQ593037.1 E012375-024-028-C05-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-028-C05 5-PRIME, mRNA sequence.    44   3e-06  2
CF196667|CF196667.1 Ir64bi1.6_B04 IR64-BI Oryza sativa (indica cultivar-group) cDNA clone IR64-BI1.6B04 5', mRNA sequence.    56   3e-05  2
BG449666|BG449666.1 NF055D11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF055D11IN 5', mRNA sequence.    58   2e-04  1
BQ141173|BQ141173.1 NF016G07PH1F1056 Phoma-infected Medicago truncatula cDNA clone NF016G07PH 5', mRNA sequence.    58   2e-04  1
DN812276|M2A1_RAT Alpha-mannosidase II (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN II) (Golgi alpha-mannosidase II) (Mannosidase alpha class 2A member 1), mRNA sequence.    56   0.001  1
CV688215|CV688215.1 sjs2-16-2_G01_sjs2-16-2G01-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   0.001  1
CV682907|CV682907.1 service43_H06_sjs2-16-2B11-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   0.001  1
CV682854|CV682854.1 service30_G09_sjs2-14-10C09-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   0.001  1
BU804021|BU804021.1 SJFBFG06 SJF Schistosoma japonicum cDNA, mRNA sequence.    56   0.001  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YC4) RecName: Full=Alpha-mannosidase D;          EC=3.2.1.24...   147   3e-34
(Q54YF7) RecName: Full=Alpha-mannosidase B;          EC=3.2.1.24...   145   7e-34
AL391146_7(AL391146|pid:none) Arabidopsis thaliana DNA chromosom...   140   3e-32
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,...   140   3e-32
BC142656_1(BC142656|pid:none) Homo sapiens mannosidase, alpha, c...   139   5e-32
(P27046) RecName: Full=Alpha-mannosidase 2;          EC=3.2.1.11...   139   6e-32
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20...   138   1e-31
(P28494) RecName: Full=Alpha-mannosidase 2;          EC=3.2.1.11...   137   2e-31
M24353_1(M24353|pid:none) Rattus norvegicus alpha-mannosidase II...   137   2e-31
AK161799_1(AK161799|pid:none) Mus musculus 13 days embryo male t...   136   5e-31

 psg: 1.02  gvh: 0.66  alm: 0.50  top: 0.30  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for SHE841 is exc

>SHE841F.Seq
GTTGGCCTACTGGNAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTA
TTCAAAGNATATAATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGA
AGTTTGCTATTCATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTG
TGATTCTGGATGGACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTAT
ATCATCAATGGTTCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTC
TGAAATTGGATTTTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTT
TATAAAACATGTTAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGA
TGAAGCATGTGCAAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTAT
TAGAGAGAAATTTGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTC
ATCATTGACACCAACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTAT
TCACTATGAATTGAANNNNNNNNNN