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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE826
Library SH
(Link to library)
Clone ID SHE826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHE826P
(Link to Original site)
Representative DNA sequence 
>SHE826 (SHE826Q) /CSM/SH/SHE8-B/SHE826Q.Seq.d/
CTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAA
AAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAAC
ATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGA
AGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAA
ATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAA
TTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTT
TAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAA
TTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTC
TCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGT
ATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGG
AAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGG
TTXXXXXXXXXXAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGA
AGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCG
TCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTC
AAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTC
TTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGA
GTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCA
TAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTC
TTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTT
TGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACT
CATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCA
TCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAA
AAAACAAAAAACTATTAATAAAAAAAAATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSV
LGDAGATKEQVIQAVKEIRGNKKITSKTAESTYEALSKYG---

---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN
LGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS
IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI
LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTINKKK*k
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywx**iiikiciykxk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*sr
riy**nkynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf
*kiisqttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiis
igrcwcnqrtsytss*rd*rk*kdyk*ncriyl*siikiw---

---n*srqkktiqcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlk
fr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*
yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**th
pww*ikrksrcccq*krsssql*yyrfktttttssfsnqktkny**kkik

Frame B:
cwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSV
LGDAGATKEQVIQAVKEIRGNKKITSKTAESTYEALSKYG---

---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN
LGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS
IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI
LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTINKKK*k

Frame C:
vgllxlinnn*nlhi*kxikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqk
nllikqiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvl
kdy*pnnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqy
wemlvqpknklykqlkrleeikrlqvklqnlpmkhyqnmv---

---lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pqi
*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfiv
lllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvnss
lvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkkllikknk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1281   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1281   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1281   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1281   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1281   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1281   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1281   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1281   0.0
SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/                       1281   0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/                       1281   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence.    80   1e-12  2
BH165696|BH165696.1 ENTTP28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH164508|BH164508.1 ENTTD23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH163900|BH163900.1 ENTSJ80TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH163033|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH161826|BH161826.1 ENTRN55TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH147856|BH147856.1 ENTQP81TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH148907|BH148907.1 ENTPE41TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH159060|BH159060.1 ENTTR44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
BH133742|BH133742.1 ENTNM81TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   6e-07  1
dna update 2006. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   216   1e-54
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   216   2e-54
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   216   2e-54
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   216   2e-54
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   215   2e-54
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   214   4e-54
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   214   5e-54
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   214   5e-54
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   214   7e-54
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   214   7e-54
protein update 2009. 4.17
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHE826 is cyt
5' end seq. ID SHE826F
5' end seq. 
>SHE826F.Seq
CTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAA
AAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAAC
ATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGA
AGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAA
ATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAA
TTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTT
TAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAA
TTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTC
TCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGT
ATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGG
AAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGG
TTNNNNNNNNNN
Length of 5' end seq. 672
3' end seq. ID SHE826Z
3' end seq. 
>SHE826Z.Seq
NNNNNNNNNNAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAG
TTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTC
TTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAA
ATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTT
TATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGT
TTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATA
GTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTT
TAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTG
GTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCA
TCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATC
TCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAA
AACAAAAAACTATTAATAAAAAAAAATAAAAA
Length of 3' end seq. 692
Connected seq. ID SHE826P
Connected seq. 
>SHE826P.Seq
CTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAA
AAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAAC
ATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGA
AGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAA
ATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAA
TTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTT
TAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAA
TTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTC
TCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGT
ATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGG
AAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGG
TT----------AACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGA
AGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCG
TCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTC
AAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTC
TTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGA
GTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCA
TAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTC
TTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTT
TGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACT
CATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCA
TCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAA
AAAACAAAAAACTATTAATAAAAAAAAATAAAAA
Length of connected seq. 1344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -