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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE825
Library SH
(Link to library)
Clone ID SHE825
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12445-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHE825 (SHE825Q) /CSM/SH/SHE8-B/SHE825Q.Seq.d/
TGTTGGCCTACTGGNTAACAACACACCAAAACAATGCAAAAACTAATAAAAAACAACAAC
AACAACCAACCAAACAAACAACCACTCAAAAGAAAAAGAAAGAACAACCATCCAAACCAG
TTGAGGTTAAATCAGAAACTGTAAAGGTTGAATCACCAAAAGTAGTTGAACCAGTAGTCG
TTAAACCAGCTGTCACTGAACAACAACCAAAGAAAGTAGAGGAACCAAAGAAAGTTGTTG
AAAAACAACAACCACCAAAGAAAGCAGCAGAACCAAAGAAAGTTGTCGAACAACCAAAGA
AAGTAGAGGAACCAAAGAAAGTAGCAGAACCAAAGAAAGTTGTTGAACAACCACCACCAA
AGAAACAAGCAACTAAAGTTGAACAACCACCAGTAAAACAACCAATCAAAAATACTACCA
CCACCACTACAAATGTCATTATAGAAGAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LAYWXTTHQNNAKTNKKQQQQPTKQTTTQKKKKEQPSKPVEVKSETVKVESPKVVEPVVV
KPAVTEQQPKKVEEPKKVVEKQQPPKKAAEPKKVVEQPKKVEEPKKVAEPKKVVEQPPPK
KQATKVEQPPVKQPIKNTTTTTTNVIIE---
Translated Amino Acid sequence (All Frames) 
Frame A:
cwptg*qhtktmqkliknnnnnqpnkqplkrkrknnhpnqlrlnqkl*rlnhqk*lnq*s
lnqlslnnnqrk*rnqrkllknnnhqrkqqnqrklsnnqrk*rnqrk*qnqrkllnnhhq
rnkqlklnnhq*nnqskilppplqmsl*k---


Frame B:
vgllxnntpkqckn**ktttttnqtnnhskekerttiqts*g*irnckg*itkss*tssr
*tsch*tttkesrgtkesc*kttttkessrtkescrttkesrgtkessrtkesc*ttttk
etsn*s*tttskttnqkyyhhhykchyrr---


Frame C:
LAYWXTTHQNNAKTNKKQQQQPTKQTTTQKKKKEQPSKPVEVKSETVKVESPKVVEPVVV
KPAVTEQQPKKVEEPKKVVEKQQPPKKAAEPKKVVEQPKKVEEPKKVAEPKKVVEQPPPK
KQATKVEQPPVKQPIKNTTTTTTNVIIE---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ448 (VHQ448Q) /CSM/VH/VHQ4-B/VHQ448Q.Seq.d/                        654   0.0
SHE825 (SHE825Q) /CSM/SH/SHE8-B/SHE825Q.Seq.d/                        654   0.0
VHK479 (VHK479Q) /CSM/VH/VHK4-D/VHK479Q.Seq.d/                        626   e-179
AFO477 (AFO477Q) /CSM/AF/AFO4-D/AFO477Q.Seq.d/                         92   9e-18
VHC614 (VHC614Q) /CSM/VH/VHC6-A/VHC614Q.Seq.d/                         46   5e-04
VHI673 (VHI673Q) /CSM/VH/VHI6-D/VHI673Q.Seq.d/                         42   0.007
VHE526 (VHE526Q) /CSM/VH/VHE5-B/VHE526Q.Seq.d/                         42   0.007
SHG744 (SHG744Q) /CSM/SH/SHG7-B/SHG744Q.Seq.d/                         42   0.007
SHF884 (SHF884Q) /CSM/SH/SHF8-D/SHF884Q.Seq.d/                         42   0.007
SHB358 (SHB358Q) /CSM/SH/SHB3-C/SHB358Q.Seq.d/                         42   0.007
own update 2002.12. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF019980|AF019980.1 Dictyostelium discoideum ZipA (zipA) gene, partial cds.   654   0.0    1
BH149656|BH149656.1 ENTPE16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   4e-04  3
AZ527910|AZ527910.1 ENTCD91TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   5e-04  3
AZ548474|AZ548474.1 ENTEU76TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   5e-04  3
BH153358|BH153358.1 ENTQY43TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   5e-04  3
AE017002|AE017002.1 Bacillus cereus ATCC 14579 section 5 of 18 of the complete genome.    54   6e-04  3
AB100271|AB100271.2 Mus musculus Ttn mRNA for connectin/titin N2A-PEVK, partial cds.    44   0.005  3
DU750263|DU750263.1 ASNF1378.g2 HF130_10-06-02 uncultured marine microorganism HF130_10-06-02 genomic clone HF0130_014B05, genomic survey sequence.    28   0.032  3
BX248512|BX248512.14 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-284D12.    40   0.082  4
BG388707|BG388707.1 602413788F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4522244 5', mRNA sequence.    38   0.082  2
dna update 2006. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF019980_1(AF019980|pid:none) Dictyostelium discoideum ZipA (zip...    42   0.008
protein update 2008.11.16
PSORT 

 psg: 0.81  gvh: 0.15  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SHE825 is nuc
5' end seq. ID SHE825F
5' end seq. 
>SHE825F.Seq
TGTTGGCCTACTGGNTAACAACACACCAAAACAATGCAAAAACTAATAAAAAACAACAAC
AACAACCAACCAAACAAACAACCACTCAAAAGAAAAAGAAAGAACAACCATCCAAACCAG
TTGAGGTTAAATCAGAAACTGTAAAGGTTGAATCACCAAAAGTAGTTGAACCAGTAGTCG
TTAAACCAGCTGTCACTGAACAACAACCAAAGAAAGTAGAGGAACCAAAGAAAGTTGTTG
AAAAACAACAACCACCAAAGAAAGCAGCAGAACCAAAGAAAGTTGTCGAACAACCAAAGA
AAGTAGAGGAACCAAAGAAAGTAGCAGAACCAAAGAAAGTTGTTGAACAACCACCACCAA
AGAAACAAGCAACTAAAGTTGAACAACCACCAGTAAAACAACCAATCAAAAATACTACCA
CCACCACTACAAATGTCATTATAGAAGAANNNNNNNNNN
Length of 5' end seq. 459
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -