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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE817
Library SH
(Link to library)
Clone ID SHE817
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11404-1|Contig-U13255-1
Original site URL
Representative seq. ID SHE817P
(Link to Original site)
Representative DNA sequence 
>SHE817 (SHE817Q) /CSM/SH/SHE8-A/SHE817Q.Seq.d/
ACTGTTGGCCTACTGGNATTTATTATTTATTTAATTATTTATTAGTACAAAACAATTTAT
TCAATTAAATTTGTTTGTGTATTTGTATTTGTATATATTTATATATTAAAAAAAAAAXXX
XXXXXXXAAAAATTACCATTGGCTTGGATAGTGTTTTCAAGGATTTAATATTGGAAGAAT
CTCAAGCTCAAAATGAAGNTAGTGGTGCCACCCCAATTCCAGATAGTCCTGTACCAACAA
GATCACCACAACCAACCTCACCACCGATCACTCCACAACCAACTCCAACCACCAATGTTC
CACCTGTCACTGCCCCAAGAACTGGTGCTGCTGCTCCTCTTAAACCCGCAAATCCACCAC
CAGTTTCAACTACAACTACACCACCAGTTTCAACTACACCAAAACCAACTCAACCAGTCT
CTAAATTTGGTGCTAAATTATCAGCAAACTCTGCTGTCGCCGAGGCTATCGCTAGAAATA
TGGGTGGAGGTGCGCCACCAATCAGAAAACCAGTAGCACCAGAACCAGAACCAGAACCAG
TCACTCCAACTAAAGATGTTACACCACTTAAATCAAAACCTGTTGTTGCTCCAAGATCAA
CTCCAACCACTTCAACCCCAACTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxfiiyliiy*YKTIYSIKFVCVFVFVYIYILKKK---

---KITIGLDSVFKDLILEESQAQNEXSGATPIPDSPVPTRSPQPTSPPITPQPTPTTNV
PPVTAPRTGAAAPLKPANPPPVSTTTTPPVSTTPKPTQPVSKFGAKLSANSAVAEAIARN
MGGGAPPIRKPVAPEPEPEPVTPTKDVTPLKSKPVVAPRSTPTTSTPTK
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfiiyliiy*YKTIYSIKFVCVFVFVYIYILKKK---

---knyhwlg*cfqgfnigrisssk*x*wchpnsr*sctnkitttnlttdhsttnsnhqc
stchcpknwcccss*trksttsfnynyttsfnytktnstsl*iwc*iisklccrrgyr*k
ygwrcatnqktsstrtrtrtshsn*rcytt*iktcccskinsnhfnpn*

Frame B:
llaywxllfi*lfistkqfiqlnlfvylylyifiy*kk---

---KITIGLDSVFKDLILEESQAQNEXSGATPIPDSPVPTRSPQPTSPPITPQPTPTTNV
PPVTAPRTGAAAPLKPANPPPVSTTTTPPVSTTPKPTQPVSKFGAKLSANSAVAEAIARN
MGGGAPPIRKPVAPEPEPEPVTPTKDVTPLKSKPVVAPRSTPTTSTPTK

Frame C:
cwptgiyylfnyllvqnnlfn*iclciciciylyikkk---

---klplawivfsri*ywknlklkmkxvvppqfqivlyqqdhhnqphhrslhnqlqppmf
hlslpqelvlllllnpqihhqfqlqlhhqfqlhqnqlnqslnlvlnyqqtllsprlslei
wvevrhqsenq*hqnqnqnqslqlkmlhhlnqnllllqdqlqplqpql
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE817 (SHE817Q) /CSM/SH/SHE8-A/SHE817Q.Seq.d/                        638   0.0
VHN632 (VHN632Q) /CSM/VH/VHN6-B/VHN632Q.Seq.d/                        630   e-180
VHL802 (VHL802Q) /CSM/VH/VHL8-A/VHL802Q.Seq.d/                        630   e-180
VHK329 (VHK329Q) /CSM/VH/VHK3-B/VHK329Q.Seq.d/                        630   e-180
VHC437 (VHC437Q) /CSM/VH/VHC4-B/VHC437Q.Seq.d/                        630   e-180
VFK111 (VFK111Q) /CSM/VF/VFK1-A/VFK111Q.Seq.d/                        630   e-180
SLD123 (SLD123Q) /CSM/SL/SLD1-A/SLD123Q.Seq.d/                        630   e-180
AHI527 (AHI527Q) /CSM/AH/AHI5-B/AHI527Q.Seq.d/                        630   e-180
SLD154 (SLD154Q) /CSM/SL/SLD1-C/SLD154Q.Seq.d/                        617   e-176
VHC848 (VHC848Q) /CSM/VH/VHC8-B/VHC848Q.Seq.d/                        559   e-158
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF388524|AF388524.1 Dictyostelium discoideum carmil gene, complete cds.   630   0.0    2
CT009662|CT009662.20 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH29-511O15.    54   0.004  1
AC167363|AC167363.2 Mus musculus chromosome 17 clone RP23-73N16, WORKING DRAFT SEQUENCE, 2 ordered pieces.    54   0.004  1
AC109997|AC109997.1 Homo sapiens chromosome 5 clone CTD-2076O1, WORKING DRAFT SEQUENCE, 3 unordered pieces.    54   0.004  1
AC104082|AC104082.3 Homo sapiens BAC clone RP11-570L13 from 4, complete sequence.    54   0.004  1
AC103559|AC103559.2 Homo sapiens chromosome 3 clone RP11-286L5, complete sequence.    54   0.004  1
AC098481|AC098481.2 Homo sapiens chromosome 3 clone RP11-349E16, complete sequence.    54   0.004  1
Z16804|Z16804.1 H. sapiens (D3S1284) DNA segment containing (CA) repeat; clone AFM184yb2; single read.    54   0.004  1
AL198987|AL198987.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  141N17 of library G from Tetraodon nigroviridis.    50   0.011  2
BB899308|BB899308.1 Macaca fascicularis cDNA clone: Qlv-U273A-G11, 3'end, Sugano cDNA library, expressed in adult liver.    52   0.015  1
dna update 2006. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil ge...   107   3e-22
protein update 2008.11.16
PSORT 

 psg: 1.00  gvh: 0.51  alm: 0.26  top: 0.53  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 1.25  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHE817 is end
5' end seq. ID SHE817F
5' end seq. 
>SHE817F.Seq
ACTGTTGGCCTACTGGNATTTATTATTTATTTAATTATTTATTAGTACAAAACAATTTAT
TCAATTAAATTTGTTTGTGTATTTGTATTTGTATATATTTATATATTAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 127
3' end seq. ID SHE817Z
3' end seq. 
>SHE817Z.Seq
NNNNNNNNNNAAAAATTACCATTGGCTTGGATAGTGTTTTCAAGGATTTAATATTGGAAG
AATCTCAAGCTCAAAATGAAGNTAGTGGTGCCACCCCAATTCCAGATAGTCCTGTACCAA
CAAGATCACCACAACCAACCTCACCACCGATCACTCCACAACCAACTCCAACCACCAATG
TTCCACCTGTCACTGCCCCAAGAACTGGTGCTGCTGCTCCTCTTAAACCCGCAAATCCAC
CACCAGTTTCAACTACAACTACACCACCAGTTTCAACTACACCAAAACCAACTCAACCAG
TCTCTAAATTTGGTGCTAAATTATCAGCAAACTCTGCTGTCGCCGAGGCTATCGCTAGAA
ATATGGGTGGAGGTGCGCCACCAATCAGAAAACCAGTAGCACCAGAACCAGAACCAGAAC
CAGTCACTCCAACTAAAGATGTTACACCACTTAAATCAAAACCTGTTGTTGCTCCAAGAT
CAACTCCAACCACTTCAACCCCAACTAAA
Length of 3' end seq. 509
Connected seq. ID SHE817P
Connected seq. 
>SHE817P.Seq
ACTGTTGGCCTACTGGNATTTATTATTTATTTAATTATTTATTAGTACAAAACAATTTAT
TCAATTAAATTTGTTTGTGTATTTGTATTTGTATATATTTATATATTAAAAAAAAAA---
-------AAAAATTACCATTGGCTTGGATAGTGTTTTCAAGGATTTAATATTGGAAGAAT
CTCAAGCTCAAAATGAAGNTAGTGGTGCCACCCCAATTCCAGATAGTCCTGTACCAACAA
GATCACCACAACCAACCTCACCACCGATCACTCCACAACCAACTCCAACCACCAATGTTC
CACCTGTCACTGCCCCAAGAACTGGTGCTGCTGCTCCTCTTAAACCCGCAAATCCACCAC
CAGTTTCAACTACAACTACACCACCAGTTTCAACTACACCAAAACCAACTCAACCAGTCT
CTAAATTTGGTGCTAAATTATCAGCAAACTCTGCTGTCGCCGAGGCTATCGCTAGAAATA
TGGGTGGAGGTGCGCCACCAATCAGAAAACCAGTAGCACCAGAACCAGAACCAGAACCAG
TCACTCCAACTAAAGATGTTACACCACTTAAATCAAAACCTGTTGTTGCTCCAAGATCAA
CTCCAACCACTTCAACCCCAACTAAA
Length of connected seq. 616
Full length Seq ID -
Full length Seq. -
Length of full length seq. -