>SHE813 (SHE813Q) /CSM/SH/SHE8-A/SHE813Q.Seq.d/
XXXXXXXXXXCCTTTTTAGATGAAAATGNACAAGATGNTGATCNATTACAAAATGAAATG
GACCAATTAGAACTNTNANTTGAAGAGAATGAAGAAGANCAATTTTCAAATAAAAATTTN
CAACAACTTAATGAGAATGANAATCAACNNCAACANCAAGGACAACATCAAGTTCAAGCA
TCAAATGTTGACACAACAAATCGTTGAACAACTTAAAGTTATCAAAGNATTTCAAAGACA
AGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTTTNNTTGAGTGATGT
NAAAAAGCTCAACTTGAATTGGATGNTGAATTGGCTAAAAATAATAAACNAGAGAATCAA
GATGAGAATTTAGTTCAAGAGAAACAACAATCTCCGACCAAATTAAAAATCAATTAAAAA
AATTCAACANAACAACAAATCCAAGAACAACAAGATAAT

---f*mkmxkmxixykmkwtn*NXXLKRMKKXNFQIKIXNNLMRMXINXNXKDNIKFKHQ
MLTQQIVEQLKVIKXFQRQDQQKKQKIQQENDAVXLSDVKKLNLNWMXNWLKIINXRIKM
RI*fkrnnnlrpn*ksikkiqxnnksknnki

Frame A:
---lfr*kxtrx*sitk*ngpirtxx*re*rrxifk*kfxtt**e*xstxtxrttssssi
kc*hnkslnnlklskxfkdkinkrnkkfnkrtmlfx*vmxksst*igx*ig*k**tresr
*efssrettisdqiknqlkkfnxttnprttr*


Frame B:
---fldenxqdxdxlqnemdqlelxxeeneexqfsnknxqqlnenxnqxqxqgqhqvqas
nvdttnr*tt*syqxisktrstketknstrerccxxe*cxkaqleldxelaknnkxenqd
enlvqekqqsptklkin*knstxqqiqeqqdn


Frame C:
---f*mkmxkmxixykmkwtn*NXXLKRMKKXNFQIKIXNNLMRMXINXNXKDNIKFKHQ
MLTQQIVEQLKVIKXFQRQDQQKKQKIQQENDAVXLSDVKKLNLNWMXNWLKIINXRIKM
RI*fkrnnnlrpn*ksikkiqxnnksknnki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE813 (SHE813Q) /CSM/SH/SHE8-A/SHE813Q.Seq.d/                        735   0.0
AHI404 (AHI404Q) /CSM/AH/AHI4-A/AHI404Q.Seq.d/                        646   0.0
CHK779 (CHK779Q) /CSM/CH/CHK7-D/CHK779Q.Seq.d/                        642   0.0
SHG407 (SHG407Q) /CSM/SH/SHG4-A/SHG407Q.Seq.d/                        630   e-180
AHF886 (AHF886Q) /CSM/AH/AHF8-D/AHF886Q.Seq.d/                        630   e-180
SHB307 (SHB307Q) /CSM/SH/SHB3-A/SHB307Q.Seq.d/                        628   e-179
CHL695 (CHL695Q) /CSM/CH/CHL6-D/CHL695Q.Seq.d/                        628   e-179
AHE849 (AHE849Q) /CSM/AH/AHE8-C/AHE849Q.Seq.d/                        628   e-179
SHC746 (SHC746Q) /CSM/SH/SHC7-B/SHC746Q.Seq.d/                        626   e-179
CHN565 (CHN565Q) /CSM/CH/CHN5-C/CHN565Q.Seq.d/                        626   e-179

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   256   e-178  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    98   2e-16  1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.17   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.17   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.17   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.17   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.17   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.17   1
AC176034|AC176034.1 Strongylocentrotus purpuratus clone R3-18I18, WORKING DRAFT SEQUENCE, 16 unordered pieces.    44   0.22   3
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    38   0.45   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...    74   6e-17
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   3.9
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   3.9
BC065891_1(BC065891|pid:none) Danio rerio zgc:136713, mRNA (cDNA...    32   6.6
BC115235_1(BC115235|pid:none) Danio rerio zgc:136713, mRNA (cDNA...    32   6.6

 psg: 0.67  gvh: 0.24  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	 12.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for SHE813 is nuc

>SHE813Z.Seq
NNNNNNNNNNCCTTTTTAGATGAAAATGNACAAGATGNTGATCNATTACAAAATGAAATG
GACCAATTAGAACTNTNANTTGAAGAGAATGAAGAAGANCAATTTTCAAATAAAAATTTN
CAACAACTTAATGAGAATGANAATCAACNNCAACANCAAGGACAACATCAAGTTCAAGCA
TCAAATGTTGACACAACAAATCGTTGAACAACTTAAAGTTATCAAAGNATTTCAAAGACA
AGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTTTNNTTGAGTGATGT
NAAAAAGCTCAACTTGAATTGGATGNTGAATTGGCTAAAAATAATAAACNAGAGAATCAA
GATGAGAATTTAGTTCAAGAGAAACAACAATCTCCGACCAAATTAAAAATCAATTAAAAA
AATTCAACANAACAACAAATCCAAGAACAACAAGATAAT