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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE809
Library SH
(Link to library)
Clone ID SHE809
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15337-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHE809 (SHE809Q) /CSM/SH/SHE8-A/SHE809Q.Seq.d/
XXXXXXXXXXTACTTCCNCATTGGTTGGGGCCNCCCCTTTAGCNCAAANANAACGTGTNG
AAAAGGGTANAACAAGTGATGGTGGTCCCCTNTANANAAAGGATCCNACTTGGGNTGAAG
GTTTAATTTTTGCTGCAAAATNTGTTGCCCNAGCCNNTAAAGCTTTGGTAGATAATGCCA
ACAAGACAGCATTTGGTCAANAGATCCCNGGTGGNACANAANAAGCTTTCATTGCAANTT
CGATGGCTGNAANTGCTGCAACTTTTCAATTGGTNTNTGCTTGTAAATTTAAATTTGATA
TCNATAGTCCTTTTCAACATAAACTTTCAAATGCTGCCAAATCCGTATCCAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---TSXLVGAXPLAQXXRVEKGXTSDGGPLXXKDPTWXEGLIFAAKXVAXAXKALVDNAN
KTAFGQXIPGGTXXAFIAXSMAXXAATFQLVXACKFKFDIXSPFQHKLSNAAKSVS
Translated Amino Acid sequence (All Frames) 
Frame A:
---TSXLVGAXPLAQXXRVEKGXTSDGGPLXXKDPTWXEGLIFAAKXVAXAXKALVDNAN
KTAFGQXIPGGTXXAFIAXSMAXXAATFQLVXACKFKFDIXSPFQHKLSNAAKSVS


Frame B:
---lphwlgppl*xkxnvxkrvxqvmvvpxxxrixlgxkv*fllqnxlpxpxklw*impt
rqhlvxrsxvxxxklslqxrwlxxlqlfnwxxlvnlnlisivlfninfqmlpnpyp


Frame C:
---fxigwgxpfsxxxtcxkgxnk*wwspxxkgsxlg*rfnfcckxccpsx*sfgr*cqq
dsiwsxdpxwxxxsfhcxfdgxxccnfsigxcl*i*i*yx*sfst*tfkccqiriq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE809 (SHE809Q) /CSM/SH/SHE8-A/SHE809Q.Seq.d/                        517   e-146
VHQ296 (VHQ296Q) /CSM/VH/VHQ2-D/VHQ296Q.Seq.d/                        430   e-120
VHP343 (VHP343Q) /CSM/VH/VHP3-B/VHP343Q.Seq.d/                        430   e-120
VHH530 (VHH530Q) /CSM/VH/VHH5-B/VHH530Q.Seq.d/                        430   e-120
VHB330 (VHB330Q) /CSM/VH/VHB3-B/VHB330Q.Seq.d/                        430   e-120
VFO311 (VFO311Q) /CSM/VF/VFO3-A/VFO311Q.Seq.d/                        430   e-120
VFI643 (VFI643Q) /CSM/VF/VFI6-B/VFI643Q.Seq.d/                        430   e-120
SSE734 (SSE734Q) /CSM/SS/SSE7-B/SSE734Q.Seq.d/                        430   e-120
SLB750 (SLB750Q) /CSM/SL/SLB7-C/SLB750Q.Seq.d/                        430   e-120
SHL758 (SHL758Q) /CSM/SH/SHL7-C/SHL758Q.Seq.d/                        430   e-120
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC178740|AC178740.1 Strongylocentrotus purpuratus clone R3-3002K9, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44   2.0    1
CX717922|CX717922.1 1334456 NCCCWA 07RT Oncorhynchus mykiss cDNA 3', mRNA sequence.    42   8.0    1
AC158172|AC158172.17 Medicago truncatula clone mth2-143b6, WORKING DRAFT SEQUENCE.    42   8.0    1
AC182127|AC182127.2 Bos taurus clone CH240-487M22, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    42   8.0    1
AC181443|AC181443.1 Strongylocentrotus purpuratus clone R3-50L4, WORKING DRAFT SEQUENCE, 15 unordered pieces.    42   8.0    1
AC181428|AC181428.1 Strongylocentrotus purpuratus clone R3-50G16, WORKING DRAFT SEQUENCE, 16 unordered pieces.    42   8.0    1
AC168010|AC168010.2 Bos taurus clone CH240-201C9, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    42   8.0    1
AC124163|AC124163.2 Bos taurus clone RP42-242H20, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42   8.0    1
AC159667|AC159667.2 Bos taurus clone CH240-79D23, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces.    42   8.0    1
AC155016|AC155016.2 Bos taurus clone CH240-34O3, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    42   8.0    1
dna update 2006. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K81) RecName: Full=Talin-B;                                        58   9e-08
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...    58   9e-08
U07938_1(U07938|pid:none) Saccharomyces cerevisiae 117-8A Ufg1p ...    50   2e-05
(Q9Y4G6) RecName: Full=Talin-2;                                        48   9e-05
AF402000_1(AF402000|pid:none) Homo sapiens talin 2 mRNA, complet...    48   9e-05
AB002318_1(AB002318|pid:none) Human mRNA for KIAA0320 gene, part...    48   9e-05
(P54633) RecName: Full=Talin-A; AltName: Full=Filopodin;               48   1e-04
D89267_1(D89267|pid:none) Schizosaccharomyces pombe mRNA, partia...    48   1e-04
A57036(A57036)talin - slime mold (Dictyostelium discoideum)            48   1e-04
(Q9P6L5) RecName: Full=Endocytosis protein end4; AltName: Full=S...    48   1e-04
protein update 2009. 5.29
PSORT 

 psg: 0.88  gvh: 0.57  alm: 0.39  top: 0.47  tms: 0.00  mit: 0.27  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHE809 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHE809Z
3' end seq. 
>SHE809Z.Seq
NNNNNNNNNNTACTTCCNCATTGGTTGGGGCCNCCCCTTTAGCNCAAANANAACGTGTNG
AAAAGGGTANAACAAGTGATGGTGGTCCCCTNTANANAAAGGATCCNACTTGGGNTGAAG
GTTTAATTTTTGCTGCAAAATNTGTTGCCCNAGCCNNTAAAGCTTTGGTAGATAATGCCA
ACAAGACAGCATTTGGTCAANAGATCCCNGGTGGNACANAANAAGCTTTCATTGCAANTT
CGATGGCTGNAANTGCTGCAACTTTTCAATTGGTNTNTGCTTGTAAATTTAAATTTGATA
TCNATAGTCCTTTTCAACATAAACTTTCAAATGCTGCCAAATCCGTATCCAA
Length of 3' end seq. 352
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -