>SHE803 (SHE803Q) /CSM/SH/SHE8-A/SHE803Q.Seq.d/
XXXXXXXXXXGATTTGATCATCATAAATGTTGGGGAAAAAATAAAAATTTTGGTTATTAT
ACAGAATTTGCCTTATCTGCTTATAATACATACTTTCCAACACCAAATGGTATCGAACCA
GTTTCATTCTTTGAAGGAGGTGTAATTAGTGCAGATTTCAAATCTCAACAAATGTATGTC
CATTTTGGATTAGTTGCTGGTAATTCGACTGTTTGGGGTAAATATTGGGGATTTGGTTCA
AATAGTACTGAATATGTTTTAATAAATGGTACATGCACTTCAAACAAATTATCATATCCA
TTCCCACCTTCTGTTCCAAAATTCAAGAAAGTTGGTGAAACTAAAATTGGTCAAATAGAT
GTTGATGTAGTTATTATGAAACACCAAGAAAAGTATAATAACTATACCAGACAATGCACA
TTAATTCAAAAAGGTACTTGCACACCAATGTCAAATAATGTTGGTAATATTGATAAATCA
AACAAGGGTTTCACTTTAATGAATTTCTACAAATATGAAGGAAAAGCTCGTAAAGATAAA
TTCCAATTACCATCAGAATGTTATGGTGTTCAACCAAGTGACTCAACTTCATCCTTTAGA
ATCAATACAAATAATGTTGCTCAAAATGTTCTTGGTCATAATGAAGATGAACCAAATAAA
AAACATCA

---FDHHKCWGKNKNFGYYTEFALSAYNTYFPTPNGIEPVSFFEGGVISADFKSQQMYVH
FGLVAGNSTVWGKYWGFGSNSTEYVLINGTCTSNKLSYPFPPSVPKFKKVGETKIGQIDV
DVVIMKHQEKYNNYTRQCTLIQKGTCTPMSNNVGNIDKSNKGFTLMNFYKYEGKARKDKF
QLPSECYGVQPSDSTSSFRINTNNVAQNVLGHNEDEPNKKH

Frame A:
---i*ss*mlgkk*kfwllyriclicl*yilsntkwyrtsfil*rrcn*crfqistnvcp
fwiscw*fdclg*ilgiwfk*y*icfnkwymhfkqiiisiptfcskiqesw*n*nwsnrc
*csyyetprkv**lyqtmhinskrylhtnvk*cw*y**ikqgfhfneflqi*rkss*r*i
pitirmlwcstk*lnfil*nqyk*ccskcsws**r*tk*kts


Frame B:
---FDHHKCWGKNKNFGYYTEFALSAYNTYFPTPNGIEPVSFFEGGVISADFKSQQMYVH
FGLVAGNSTVWGKYWGFGSNSTEYVLINGTCTSNKLSYPFPPSVPKFKKVGETKIGQIDV
DVVIMKHQEKYNNYTRQCTLIQKGTCTPMSNNVGNIDKSNKGFTLMNFYKYEGKARKDKF
QLPSECYGVQPSDSTSSFRINTNNVAQNVLGHNEDEPNKKH


Frame C:
---liiinvgekikilviiqnlpylliihtfqhqmvsnqfhslkev*lvqisnlnkcmsi
ld*llvirlfgvnigdlvqivlnmf**mvhalqtnyhihshllfqnsrklvklklvk*ml
m*ll*ntkksiitipdnah*fkkvlahqcqimlvilinqtrvsl**istnmkeklvkins
nyhqnvmvfnqvtqlhplesiqimllkmflvimkmnqikni

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE803 (SHE803Q) /CSM/SH/SHE8-A/SHE803Q.Seq.d/                       1233   0.0
SSD101 (SSD101Q) /CSM/SS/SSD1-A/SSD101Q.Seq.d/                       1183   0.0
SSI253 (SSI253Q) /CSM/SS/SSI2-C/SSI253Q.Seq.d/                       1124   0.0
SSE702 (SSE702Q) /CSM/SS/SSE7-A/SSE702Q.Seq.d/                       1122   0.0
SSA444 (SSA444Q) /CSM/SS/SSA4-B/SSA444Q.Seq.d/                       1092   0.0
SSF320 (SSF320Q) /CSM/SS/SSF3-A/SSF320Q.Seq.d/                       1072   0.0
SSG272 (SSG272Q) /CSM/SS/SSG2-C/SSG272Q.Seq.d/                       1065   0.0
SSM257 (SSM257Q) /CSM/SS/SSM2-C/SSM257Q.Seq.d/                        995   0.0
SSJ866 (SSJ866Q) /CSM/SS/SSJ8-C/SSJ866Q.Seq.d/                        971   0.0
SSC541 (SSC541Q) /CSM/SS/SSC5-B/SSC541Q.Seq.d/                        961   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC173419|AC173419.2 Bos taurus clone CH240-280G14, *** SEQUENCING IN PROGRESS ***, 42 unordered pieces.    52   0.016  1
AC095434|AC095434.9 Rattus norvegicus clone CH230-6P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.25   1
AC094947|AC094947.6 Rattus norvegicus clone CH230-6C17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   0.25   1
BH339179|BH339179.1 CH230-41C3.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-41C3, DNA sequence.    48   0.25   1
BH261451|BH261451.1 CH230-90I24.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-90I24, DNA sequence.    48   0.25   1
AC161789|AC161789.9 Medicago truncatula clone mth2-116a3, WORKING DRAFT SEQUENCE, 15 unordered pieces.    46   1.0    1
AC174035|AC174035.2 Bos taurus clone CH240-89O14, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    46   1.0    1
AC153349|AC153349.20 Medicago truncatula clone mth2-72p9, WORKING DRAFT SEQUENCE, 2 ordered pieces.    46   1.0    1
AC160709|AC160709.2 Bos taurus clone CH240-92A8, *** SEQUENCING IN PROGRESS ***, 32 unordered pieces.    46   1.0    1
AC160001|AC160001.3 Bos taurus clone CH240-88N4, WORKING DRAFT SEQUENCE, 16 unordered pieces.    46   1.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom...   100   3e-20
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom...   100   6e-20
AY442225_10(AY442225|pid:none) Streptomyces diastaticus polyketi...    37   0.39
FJ545274_10(FJ545274|pid:none) Streptomyces antibioticus strain ...    37   0.51
AL939127_215(AL939127|pid:none) Streptomyces coelicolor A3(2) co...    37   0.51
AF178673_2(AF178673|pid:none) Streptomyces cinnamonensis putativ...    37   0.51
BA000030_1917(BA000030|pid:none) Streptomyces avermitilis MA-468...    37   0.51
X81885_4(X81885|pid:none) Streptomyces fradiae tylMIII(orf1*), t...    37   0.67
AP009493_1170(AP009493|pid:none) Streptomyces griseus subsp. gri...    37   0.67
S72400(S72400;S63534;S63495) trans-2-enoyl-CoA reductase (NADPH2...    35   1.5

 psg: 0.70  gvh: 0.44  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SHE803 is nuc

>SHE803Z.Seq
NNNNNNNNNNGATTTGATCATCATAAATGTTGGGGAAAAAATAAAAATTTTGGTTATTAT
ACAGAATTTGCCTTATCTGCTTATAATACATACTTTCCAACACCAAATGGTATCGAACCA
GTTTCATTCTTTGAAGGAGGTGTAATTAGTGCAGATTTCAAATCTCAACAAATGTATGTC
CATTTTGGATTAGTTGCTGGTAATTCGACTGTTTGGGGTAAATATTGGGGATTTGGTTCA
AATAGTACTGAATATGTTTTAATAAATGGTACATGCACTTCAAACAAATTATCATATCCA
TTCCCACCTTCTGTTCCAAAATTCAAGAAAGTTGGTGAAACTAAAATTGGTCAAATAGAT
GTTGATGTAGTTATTATGAAACACCAAGAAAAGTATAATAACTATACCAGACAATGCACA
TTAATTCAAAAAGGTACTTGCACACCAATGTCAAATAATGTTGGTAATATTGATAAATCA
AACAAGGGTTTCACTTTAATGAATTTCTACAAATATGAAGGAAAAGCTCGTAAAGATAAA
TTCCAATTACCATCAGAATGTTATGGTGTTCAACCAAGTGACTCAACTTCATCCTTTAGA
ATCAATACAAATAATGTTGCTCAAAATGTTCTTGGTCATAATGAAGATGAACCAAATAAA
AAACATCA