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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHE783
Library SH
(Link to library)
Clone ID SHE783
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHE783P
(Link to Original site)
Representative DNA sequence 
>SHE783 (SHE783Q) /CSM/SH/SHE7-D/SHE783Q.Seq.d/
TGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATT
TAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATC
TAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTA
TTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATG
GAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCT
ATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGAT
CCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGA
ATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAA
TACAACCAGGCTGTGGAGXXXXXXXXXXTAATCGATGGTAAACCATGTACACACCNTGAA
ATCAACCATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCT
AAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTT
TATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTC
ATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATT
AATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAA
AGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAAT
CGCCAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTA
TGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATAC
TGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAA
CCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTT
GTATCATCTCATCTTCAATATCTATNAACAAAANTTNTCTTTACTTCATATATATTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
laywx*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVI
SILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGS
VNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCG---

---IDGKPCTHXEINHSHLF*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nrqtlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylxtkxxftsyifk
Translated Amino Acid sequence (All Frames) 
Frame A:
cwptgidpqlviske*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmikl
fpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*ed
plishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqave---

---*smvnhvhtxkstihtyssltcnvtnydemlkynysntkfnisisvdgqyfiaqifq
fkyestisysenkssgfpnemyigivaiiiflaliffaiktqvekyieerrarkafrsvd
nlrlklrekhaaeiakhysfgyesapkpnksyfydlgkklsrlplirccfkehtd*ilfp
nsnpiisnsklnlnqihqsiik*siyil*lflflyhlifniyxqxxsllhiyl

Frame B:
vgllxltrn**lvkneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssy
fhsfksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrri
r*fhi*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlw---

---nrw*tmytp*nqpftlilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsn
lnmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqli
iyvlnfvrnmllkspniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfq
iqiq*ypiln*t*tkftnl*snnqfiscncfcsciisssisxnkxxlyfiyi*

Frame C:
laywx*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVI
SILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGS
VNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCG---

---IDGKPCTHXEINHSHLF*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nrqtlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylxtkxxftsyifk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE783 (SHE783Q) /CSM/SH/SHE7-D/SHE783Q.Seq.d/                       2095   0.0
SHB216 (SHB216Q) /CSM/SH/SHB2-A/SHB216Q.Seq.d/                       1269   0.0
CHN371 (CHN371Q) /CSM/CH/CHN3-C/CHN371Q.Seq.d/                       1267   0.0
SHL841 (SHL841Q) /CSM/SH/SHL8-B/SHL841Q.Seq.d/                       1265   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1265   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1265   0.0
SHK629 (SHK629Q) /CSM/SH/SHK6-B/SHK629Q.Seq.d/                       1265   0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/                       1265   0.0
SHG893 (SHG893Q) /CSM/SH/SHG8-D/SHG893Q.Seq.d/                       1265   0.0
SHG659 (SHG659Q) /CSM/SH/SHG6-C/SHG659Q.Seq.d/                       1265   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   214   3e-84  11
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.088  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.089  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.089  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.089  2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.089  2
AC122168|AC122168.14 Medicago truncatula clone mth2-4o4, complete sequence.    42   0.32   6
AC118818|AC118818.4 Rattus norvegicus clone CH230-447O13, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    36   0.35   9
DU571553|DU571553.1 OO__Ba0057P22.f OO__Ba Oryza officinalis genomic clone OO__Ba0057P22 5', genomic survey sequence.    48   0.46   1
CZ115922|CZ115922.1 OA_BBa0001A09.f OA_BBa Oryza alta genomic clone OA_BBa0001A09 5', genomic survey sequence.    48   0.46   1
dna update 2006. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   295   1e-79
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   287   6e-76
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   287   6e-76
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   287   6e-76
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   250   8e-65
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   250   8e-65
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   250   8e-65
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   250   8e-65
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   249   2e-64
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   248   4e-64
protein update 2009. 4.17
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.31  top: 0.23  tms: 0.07  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHE783 is end
5' end seq. ID SHE783F
5' end seq. 
>SHE783F.Seq
TGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATT
TAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATC
TAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTA
TTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATG
GAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCT
ATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGAT
CCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGA
ATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAA
TACAACCAGGCTGTGGAGNNNNNNNNNN
Length of 5' end seq. 508
3' end seq. ID SHE783Z
3' end seq. 
>SHE783Z.Seq
NNNNNNNNNNTAATCGATGGTAAACCATGTACACACCNTGAAATCAACCATTCACACTTA
TTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAA
TACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCA
ATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGA
AATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAA
AACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGA
TAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCCAAACATTATTCATT
TGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATT
ATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCC
AAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTAT
AATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAA
TATCTATNAACAAAANTTNTCTTTACTTCATATATATTTAAA
Length of 3' end seq. 702
Connected seq. ID SHE783P
Connected seq. 
>SHE783P.Seq
TGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATT
TAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATC
TAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTA
TTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATG
GAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCT
ATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGAT
CCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGA
ATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAA
TACAACCAGGCTGTGGAG----------TAATCGATGGTAAACCATGTACACACCNTGAA
ATCAACCATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCT
AAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTT
TATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTC
ATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATT
AATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAA
AGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAAT
CGCCAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTA
TGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATAC
TGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAA
CCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTT
GTATCATCTCATCTTCAATATCTATNAACAAAANTTNTCTTTACTTCATATATATTTAAA
Length of connected seq. 1190
Full length Seq ID -
Full length Seq. -
Length of full length seq. -