SHE759
Library SH
(Link to library)
Clone ID SHE759
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13951-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHE759 (SHE759Q) /CSM/SH/SHE7-C/SHE759Q.Seq.d/
XXXXXXXXXXCAATTTTCAAGGGTAGAAATTGGAAAAAGAATACCATTTACACCGCTCTC
TCAATGCCTGGTATTATCTTTGGCATTTTCTTCTTTGTAAACATGTTTTTACGTGGTGCC
AAGTCCTCTGCCGCCGTGCCATTTGGAACTTTTGCTTCAATCATTGCAATGTGGTTTGGT
ATCTCCGTGCCATTGGTCTTCTTGGGCAGTTATTTCGCCTCAAAGAAACCAGTGCCAGAG
GATCCAGTTAGAACCAACCAAATCCCACGTCAAGTTCCAGACCAAATTTGGTATATGAAT
CCTTATCTCTCCATTTTAATGGGTGGTATTTTACCATTTGGTGCTGTCTTTATCGAACTT
CATTTCATTCTCACCTCACTTTGGGATAATCAATTCTACTATATCTTTGGTTTCCTTTTC
ATCGTTTTAATGATCTTAATTGTAACTTCCGCTGAAATCTCAATCGTTATGTGTTATTTC
CAATTATGCGCTGAAGATCATCATTGGTGGTGGAGATCCTTCTTAACCGCTGGTAGCTCT
TCTCTTTACATGTTTATCTACTCTGTTAGTTTCTTCCGTTATTTAGGTATCACAAAATTC
ATCTCATCTTTATTGTATTTCT
sequence update 2002. 9.10
Translated Amino Acid sequence
---IFKGRNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGI
SVPLVFLGSYFASKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELH
FILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSS
LYMFIYSVSFFRYLGITKFISSLLYF


Translated Amino Acid sequence (All Frames)
Frame A:
---nfqg*klekeyhlhrslnawyylwhfllckhvftwcqvlcrraiwnfcfnhcnvvwy
lraigllgqlfrlketsargss*nqpnptsssrpnlvyeslslhfngwyftiwcclyrts
fhshltlg*sillylwfpfhrfndlncnfr*nlnryvlfpimr*rsslvveillnrw*lf
slhvyllc*flplfryhkihlifivf


Frame B:
---IFKGRNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGI
SVPLVFLGSYFASKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELH
FILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSS
LYMFIYSVSFFRYLGITKFISSLLYF


Frame C:
---fsrveigkripftplsqclvlslafssl*tcfyvvpsplppchlelllqslqcglvs
pchwsswavispqrnqcqriqleptkshvkfqtkfgi*ilispf*wvvfyhlvlslsnfi
sfsphfgiinstislvsfssf**s*l*lplksqslcvisnyalkiiigggdps*plvall
ftclstllvssvi*vsqnsshlycis


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP885 (VHP885Q) /CSM/VH/VHP8-D/VHP885Q.Seq.d/ 1213 0.0
VHB671 (VHB671Q) /CSM/VH/VHB6-C/VHB671Q.Seq.d/ 1213 0.0
SHE759 (SHE759Q) /CSM/SH/SHE7-C/SHE759Q.Seq.d/ 1213 0.0
CHI448 (CHI448Q) /CSM/CH/CHI4-B/CHI448Q.Seq.d/ 1209 0.0
AHN564 (AHN564Q) /CSM/AH/AHN5-C/AHN564Q.Seq.d/ 1205 0.0
AHC822 (AHC822Q) /CSM/AH/AHC8-A/AHC822Q.Seq.d/ 1201 0.0
VHL703 (VHL703Q) /CSM/VH/VHL7-A/VHL703Q.Seq.d/ 1185 0.0
SFI566 (SFI566Q) /CSM/SF/SFI5-C/SFI566Q.Seq.d/ 1164 0.0
AFN124 (AFN124Q) /CSM/AF/AFN1-A/AFN124Q.Seq.d/ 1138 0.0
VFB280 (VFB280Q) /CSM/VF/VFB2-D/VFB280Q.Seq.d/ 1122 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ318760|AJ318760.1 Dictyostelium discoideum mRNA for PHG1A protein. 1213 0.0 1
CJ396666|CJ396666.1 Molgula tectiformis cDNA, gonad clone:mtgd029a02, 5' end. 54 1e-17 4
CJ350630|CJ350630.1 Molgula tectiformis cDNA, cleaving embryo clone:mtcl017d06, 5' end. 46 3e-15 4
CO093580|CO093580.1 GR__Ea15D20.r GR__Ea Gossypium raimondii cDNA clone GR__Ea15D20 3', mRNA sequence. 42 3e-14 5
CO074482|CO074482.1 GR__Ea34J21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea34J21 3', mRNA sequence. 42 3e-14 5
CO104698|CO104698.1 GR__Eb0034H20.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0034H20 3', mRNA sequence. 42 3e-14 5
DN826070|DN826070.1 G.hir-8,14 hrs post inoculation 13 Leaf cDNA 8,14 hrs post inoculation with Xanthomonas campestris pv. malvacearum 3631 Gossypium hirsutum cDNA, mRNA sequence. 42 4e-12 5
AX364380|AX364380.1 Sequence 387 from Patent WO0208410. 60 6e-12 2
CI636119|CI636119.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J06B5025E07T3, 5'end of J065025E07. 46 1e-11 4
CN762080|CN762080.1 ID0AAA3CC08FM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA3CC08 5', mRNA sequence. 64 2e-11 2
dna update 2006. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55FP0) RecName: Full=Putative phagocytic receptor 1a; Flags: P... 416 e-115
AM472385_3(AM472385|pid:none) Vitis vinifera contig VV78X080386.... 296 4e-79
AP005458_25(AP005458|pid:none) Oryza sativa Japonica Group genom... 293 2e-78
AP001307_19(AP001307|pid:none) Arabidopsis thaliana genomic DNA,... 291 8e-78
BT033572_1(BT033572|pid:none) Zea mays full-length cDNA clone ZM... 289 5e-77
EF146702_1(EF146702|pid:none) Populus trichocarpa clone WS01212_... 286 2e-76
AC073944_7(AC073944|pid:none) Arabidopsis thaliana chromosome 1 ... 286 4e-76
BT002777_1(BT002777|pid:none) Arabidopsis thaliana clone RAFL15-... 286 4e-76
AM450256_1(AM450256|pid:none) Vitis vinifera contig VV78X066506.... 284 2e-75
AY091067_1(AY091067|pid:none) Arabidopsis thaliana putative mult... 283 3e-75
protein update 2009. 5.29
PSORT

psg: 1.01 gvh: 0.60 alm: 0.16 top: 0.33 tms: 0.27 mit: 0.32 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SHE759 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHE759Z
3' end seq.
>SHE759Z.Seq
NNNNNNNNNNCAATTTTCAAGGGTAGAAATTGGAAAAAGAATACCATTTACACCGCTCTC
TCAATGCCTGGTATTATCTTTGGCATTTTCTTCTTTGTAAACATGTTTTTACGTGGTGCC
AAGTCCTCTGCCGCCGTGCCATTTGGAACTTTTGCTTCAATCATTGCAATGTGGTTTGGT
ATCTCCGTGCCATTGGTCTTCTTGGGCAGTTATTTCGCCTCAAAGAAACCAGTGCCAGAG
GATCCAGTTAGAACCAACCAAATCCCACGTCAAGTTCCAGACCAAATTTGGTATATGAAT
CCTTATCTCTCCATTTTAATGGGTGGTATTTTACCATTTGGTGCTGTCTTTATCGAACTT
CATTTCATTCTCACCTCACTTTGGGATAATCAATTCTACTATATCTTTGGTTTCCTTTTC
ATCGTTTTAATGATCTTAATTGTAACTTCCGCTGAAATCTCAATCGTTATGTGTTATTTC
CAATTATGCGCTGAAGATCATCATTGGTGGTGGAGATCCTTCTTAACCGCTGGTAGCTCT
TCTCTTTACATGTTTATCTACTCTGTTAGTTTCTTCCGTTATTTAGGTATCACAAAATTC
ATCTCATCTTTATTGTATTTCT
Length of 3' end seq. 622
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -