>SHE755 (SHE755Q) /CSM/SH/SHE7-C/SHE755Q.Seq.d/
CTGTTGGCCTACTGGGNAATTGGCTGATAAATAGNAAAAGNGNAAACAAGNATAAAGAAT
TGGCTGATAAACTTGCAAAAGAAAAAGAAGAAAAAGAAAGAAAAGAGAAAGAATTGGCTG
ATAAATTAGAAAAAGAGAAAAAAGATAAAGNAATTGGCTGATAAAGTTACAAAAGAAAAA
GAAGAAAAAGATAAAAAAGAAAAAGAATTTAAATTAAAATTAGAAAAAGAACAAAAAGAA
AAAGAATTAAAATTAAAACAAGAAAGAGAATTTGCAGAAAAAGAAGAAAGAGATCGTTTA
GAAAGAGAGAAAATTTCAAAATCTATTGAAAAAGAAACAAAATCATCCACAATAACTGAT
CAATTTAAATTATCAATTGAAAAACAACTTCAAAGTCAATTAGAAAATAAAAAGAAACCA
GTACAAGTTACTGAAGATAATAGTAGTAGTGATGGATCAACATCAACTTTAACATCATTA
ACTAAAGATAGAGTTAAAATGAAAGGTAGACAAGCACCAAGTAAAAGTCATAAAGCACCA
GGTTCAACTXXXXXXXXXXATTAATTGGTGNAAATGGTAAATATGCAAACTTTGATTATG
TTTATCAAAATGTACCAACTGATTGGGAAAATCAAATTAAATTATTTGCAATCGTAAATA
CTGGTACCATTATTAGAGCTGATGAAATCTATCGTTTCAGTCAATATGATTTAACTCCAA
GTAAAGTCTATCTATTGGATAATAGAAAGAATGTTTTCGTTTGGTCAGGTTTAAGAGCAC
AAGAAAAAGAAAAAAAGAGAGGTATGGAAATTGCAATTGATTATGTAAAATATTTAGCTG
ATTCTAGAACTGAAAATGATGTTTTATTCATTACTCAAGGTGATGAACCACTTTCTTTCA
CTTGTTATTTCCATTGTTGGGATTCTTTAAGACTTAACAACAGCAACAACAACAACAACA
ACAGCAATGGTTCTTCAAATAATACTGCTGATGGTGCTGATGAACTTGATGATGGTGCAT
CACCAAAGAATGCTGTTAATCTACTAAAGAAATATTATCAAGTTTTACCATTTGAAAAAT
TAATTGAAAAGAATACACCTCCTGAAATTGATCGTTCAGTTTTAGAAATGTATCTTAGTG
ATGAAGATTTGAAAAACATCTTGGTAGTAGAGCTGAATGGGATGCTTTACCAGCTGGAAA
AAAACTGAAAAGAAAAAAGTTT

llaywxig**ixkxxtxiknwlinlqkkkkkkkekrknwlin*KKRKKIKXLADKVTKEK
EEKDKKEKEFKLKLEKEQKEKELKLKQEREFAEKEERDRLEREKISKSIEKETKSSTITD
QFKLSIEKQLQSQLENKKKPVQVTEDNSSSDGSTSTLTSLTKDRVKMKGRQAPSKSHKAP
GST---

---LIGXNGKYANFDYVYQNVPTDWENQIKLFAIVNTGTIIRADEIYRFSQYDLTPSKVY
LLDNRKNVFVWSGLRAQEKEKKRGMEIAIDYVKYLADSRTENDVLFITQGDEPLSFTCYF
HCWDSLRLNNSNNNNNNSNGSSNNTADGADELDDGASPKNAVNLLKKYYQVLPFEKLIEK
NTPPEIDRSVLEMYLSDEDLKNILVVELNGMLYQLEKN*keks

Frame A:
llaywxig**ixkxxtxiknwlinlqkkkkkkkekrknwlin*KKRKKIKXLADKVTKEK
EEKDKKEKEFKLKLEKEQKEKELKLKQEREFAEKEERDRLEREKISKSIEKETKSSTITD
QFKLSIEKQLQSQLENKKKPVQVTEDNSSSDGSTSTLTSLTKDRVKMKGRQAPSKSHKAP
GST---

---inwxkw*ickl*lclskctn*lgksn*iicnrkywyhy*s**nlsfqsi*fnsk*sl
sig**kecfrlvrfkstrkrkkerygncn*lckifs*f*n*k*cfihysr**ttffhllf
pllgffkt*qqqqqqqqqqwffk*yc*wc**t**wcitkecc*stkeilssfti*kin*k
eyts*n*sfsfrnvs***rfekhlgsraewdalpagkklkrkkf

Frame B:
cwptgxladk*xkxkqx*rig**tckrkrrkrkkrerig**irkrekr*xnwliklqkkk
kkkikkkknln*n*kknkkkkn*n*nkkenlqkkkkeiv*kerkfqnllkkkqnhpq*li
nlnyqlknnfkvn*kikrnqykllkiivvvmdqhql*hh*lkielk*kvdkhqvkvikhq
vq---

---LIGXNGKYANFDYVYQNVPTDWENQIKLFAIVNTGTIIRADEIYRFSQYDLTPSKVY
LLDNRKNVFVWSGLRAQEKEKKRGMEIAIDYVKYLADSRTENDVLFITQGDEPLSFTCYF
HCWDSLRLNNSNNNNNNSNGSSNNTADGADELDDGASPKNAVNLLKKYYQVLPFEKLIEK
NTPPEIDRSVLEMYLSDEDLKNILVVELNGMLYQLEKN*keks

Frame C:
vgllgnwlinxkxxnkxkeladklakekeekerkekeladklekekkdkxig**sykrkr
rkr*krkri*ikirkrtkrkrikiktrkricrkrrkrsfrkrenfkiy*krnkiihnn*s
i*iin*kttsksirk*ketstsy*r*****wininfniin*r*s*ner*tstk*ks*str
fn---

---*lvxmvnmqtlimfikmyqligkiklnylqs*ilvpllelmksivsvnmi*lqvksi
ywiiermfsfgqv*ehkkkkkrevwklqlim*ni*lilelkmmfysllkvmnhflslvis
ivgil*dlttattttttamvlqiillmvlmnlmmvhhqrmlliy*rniikfyhlkn*lkr
ihllklivqf*kcilvmki*ktsw**s*mgcftswkktekkkv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE755 (SHE755Q) /CSM/SH/SHE7-C/SHE755Q.Seq.d/                        866   0.0
VHE887 (VHE887Q) /CSM/VH/VHE8-D/VHE887Q.Seq.d/                        468   e-130
SLF402 (SLF402Q) /CSM/SL/SLF4-A/SLF402Q.Seq.d/                        468   e-130
SFC352 (SFC352Q) /CSM/SF/SFC3-C/SFC352Q.Seq.d/                        468   e-130
CHG656 (CHG656Q) /CSM/CH/CHG6-C/CHG656Q.Seq.d/                        468   e-130
CFF854 (CFF854Q) /CSM/CF/CFF8-C/CFF854Q.Seq.d/                        468   e-130
AHQ312 (AHQ312Q) /CSM/AH/AHQ3-A/AHQ312Q.Seq.d/                        468   e-130
AHD852 (AHD852Q) /CSM/AH/AHD8-C/AHD852Q.Seq.d/                        468   e-130
AHA304 (AHA304Q) /CSM/AH/AHA3-A/AHA304Q.Seq.d/                        468   e-130
SLK491 (SLK491Q) /CSM/SL/SLK4-D/SLK491Q.Seq.d/                        462   e-129

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         42   0.088  13
CO120716|CO120716.1 GR__Eb024G21.f GR__Eb Gossypium raimondii cDNA clone GR__Eb024G21 5', mRNA sequence.    50   0.12   1
BX957322|BX957322.7 Zebrafish DNA sequence from clone CH211-179J10 in linkage group 10.    46   0.37   3
BF295885|BF295885.1 029PbE11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    46   0.40   2
BF294538|BF294538.1 006PbB09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    46   0.44   2
AL663105|AL663105.4 Human DNA sequence from clone RP4-743D20 on chromosome 1 Contains a  novel gene and a CpG island.    32   0.96   2
AL357112|AL357112.9 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP4-816I15.    32   0.98   2
CG734269|CG734269.1 RP11-210E16, SP6 RPCI-11 Human Male BAC Library Homo sapiens genomic clone RP11-210E16, genomic survey sequence.    32   1.3    2
BY485289|BY485289.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530123E19, 3' end partial sequence.    46   1.9    1
AC138294|AC138294.1 Mus musculus chromosome 10 clone RP23-235D19 map 10, LOW-PASS SEQUENCE SAMPLING.    46   1.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36418) RecName: Full=Protovillin; AltName: Full=100 kDa actin-...    75   3e-12
AJ427856_1(AJ427856|pid:none) Dictyostelium discoideum ORF encod...    75   4e-12
(Q8WQ85) RecName: Full=Villidin;                                       75   4e-12
BC168981_1(BC168981|pid:none) Rattus norvegicus villin 1, mRNA (...    73   2e-11
BC015267_1(BC015267|pid:none) Mus musculus villin 1, mRNA (cDNA ...    73   2e-11
AK154851_1(AK154851|pid:none) Mus musculus NOD-derived CD11c +ve...    72   4e-11
AB019233_13(AB019233|pid:none) Arabidopsis thaliana genomic DNA,...    72   5e-11
AF099929_1(AF099929|pid:none) Rattus norvegicus pervin mRNA, com...    69   4e-10
BC111730_1(BC111730|pid:none) Homo sapiens advillin, mRNA (cDNA ...    68   7e-10
AK314362_1(AK314362|pid:none) Homo sapiens cDNA, FLJ95130, Homo ...    68   7e-10

 psg: 0.27  gvh: -0.01  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.11  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHE755 is nuc

>SHE755F.Seq
CTGTTGGCCTACTGGGNAATTGGCTGATAAATAGNAAAAGNGNAAACAAGNATAAAGAAT
TGGCTGATAAACTTGCAAAAGAAAAAGAAGAAAAAGAAAGAAAAGAGAAAGAATTGGCTG
ATAAATTAGAAAAAGAGAAAAAAGATAAAGNAATTGGCTGATAAAGTTACAAAAGAAAAA
GAAGAAAAAGATAAAAAAGAAAAAGAATTTAAATTAAAATTAGAAAAAGAACAAAAAGAA
AAAGAATTAAAATTAAAACAAGAAAGAGAATTTGCAGAAAAAGAAGAAAGAGATCGTTTA
GAAAGAGAGAAAATTTCAAAATCTATTGAAAAAGAAACAAAATCATCCACAATAACTGAT
CAATTTAAATTATCAATTGAAAAACAACTTCAAAGTCAATTAGAAAATAAAAAGAAACCA
GTACAAGTTACTGAAGATAATAGTAGTAGTGATGGATCAACATCAACTTTAACATCATTA
ACTAAAGATAGAGTTAAAATGAAAGGTAGACAAGCACCAAGTAAAAGTCATAAAGCACCA
GGTTCAACTNNNNNNNNNN

>SHE755Z.Seq
NNNNNNNNNNATTAATTGGTGNAAATGGTAAATATGCAAACTTTGATTATGTTTATCAAA
ATGTACCAACTGATTGGGAAAATCAAATTAAATTATTTGCAATCGTAAATACTGGTACCA
TTATTAGAGCTGATGAAATCTATCGTTTCAGTCAATATGATTTAACTCCAAGTAAAGTCT
ATCTATTGGATAATAGAAAGAATGTTTTCGTTTGGTCAGGTTTAAGAGCACAAGAAAAAG
AAAAAAAGAGAGGTATGGAAATTGCAATTGATTATGTAAAATATTTAGCTGATTCTAGAA
CTGAAAATGATGTTTTATTCATTACTCAAGGTGATGAACCACTTTCTTTCACTTGTTATT
TCCATTGTTGGGATTCTTTAAGACTTAACAACAGCAACAACAACAACAACAACAGCAATG
GTTCTTCAAATAATACTGCTGATGGTGCTGATGAACTTGATGATGGTGCATCACCAAAGA
ATGCTGTTAATCTACTAAAGAAATATTATCAAGTTTTACCATTTGAAAAATTAATTGAAA
AGAATACACCTCCTGAAATTGATCGTTCAGTTTTAGAAATGTATCTTAGTGATGAAGATT
TGAAAAACATCTTGGTAGTAGAGCTGAATGGGATGCTTTACCAGCTGGAAAAAAACTGAA
AAGAAAAAAGTTT

>SHE755P.Seq
CTGTTGGCCTACTGGGNAATTGGCTGATAAATAGNAAAAGNGNAAACAAGNATAAAGAAT
TGGCTGATAAACTTGCAAAAGAAAAAGAAGAAAAAGAAAGAAAAGAGAAAGAATTGGCTG
ATAAATTAGAAAAAGAGAAAAAAGATAAAGNAATTGGCTGATAAAGTTACAAAAGAAAAA
GAAGAAAAAGATAAAAAAGAAAAAGAATTTAAATTAAAATTAGAAAAAGAACAAAAAGAA
AAAGAATTAAAATTAAAACAAGAAAGAGAATTTGCAGAAAAAGAAGAAAGAGATCGTTTA
GAAAGAGAGAAAATTTCAAAATCTATTGAAAAAGAAACAAAATCATCCACAATAACTGAT
CAATTTAAATTATCAATTGAAAAACAACTTCAAAGTCAATTAGAAAATAAAAAGAAACCA
GTACAAGTTACTGAAGATAATAGTAGTAGTGATGGATCAACATCAACTTTAACATCATTA
ACTAAAGATAGAGTTAAAATGAAAGGTAGACAAGCACCAAGTAAAAGTCATAAAGCACCA
GGTTCAACT----------ATTAATTGGTGNAAATGGTAAATATGCAAACTTTGATTATG
TTTATCAAAATGTACCAACTGATTGGGAAAATCAAATTAAATTATTTGCAATCGTAAATA
CTGGTACCATTATTAGAGCTGATGAAATCTATCGTTTCAGTCAATATGATTTAACTCCAA
GTAAAGTCTATCTATTGGATAATAGAAAGAATGTTTTCGTTTGGTCAGGTTTAAGAGCAC
AAGAAAAAGAAAAAAAGAGAGGTATGGAAATTGCAATTGATTATGTAAAATATTTAGCTG
ATTCTAGAACTGAAAATGATGTTTTATTCATTACTCAAGGTGATGAACCACTTTCTTTCA
CTTGTTATTTCCATTGTTGGGATTCTTTAAGACTTAACAACAGCAACAACAACAACAACA
ACAGCAATGGTTCTTCAAATAATACTGCTGATGGTGCTGATGAACTTGATGATGGTGCAT
CACCAAAGAATGCTGTTAATCTACTAAAGAAATATTATCAAGTTTTACCATTTGAAAAAT
TAATTGAAAAGAATACACCTCCTGAAATTGATCGTTCAGTTTTAGAAATGTATCTTAGTG
ATGAAGATTTGAAAAACATCTTGGTAGTAGAGCTGAATGGGATGCTTTACCAGCTGGAAA
AAAACTGAAAAGAAAAAAGTTT